CuGenDBv2

Gene ID	MC06g0873
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Nuclear polyadenylated RNA-binding protein
Genome location	MC06:7269158..7269499
RNA-Seq Expression	MC06g0873
Synteny	MC06g0873
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055721.1 uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa]

9.79e-57

77.78

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV
        MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E KQECRD   DK QE EYGIKSSLRK SL+ G  + KH K+V
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE

XP_004144070.1 uncharacterized protein LOC101217749 [Cucumis sativus]

7.90e-58

78.63

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV
        MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTSVSIV+T E KQECRD   DK QE EYGIKSSLRK+SL+ G  + KH K+V
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE

XP_016901000.1 PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo]

1.86e-56

77.78

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV
        MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E KQECRD   DK QE EYGIKSSLRK SL+ G  + KH K+V
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE

XP_022147688.1 uncharacterized protein LOC111016556 [Momordica charantia]

1.09e-77

100

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM
        MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM

Query:  DFSGKELVEIREFE
        DFSGKELVEIREFE
Subjt:  DFSGKELVEIREFE

XP_038879679.1 uncharacterized protein LOC120071456 [Benincasa hispida]

2.01e-54

77.19

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM
        MRFWMCKIHCPSSFCLCQPSP I +TGSVPL LENSPHLPSEV++VIG S SIV+TFE KQECRDDKE      IKSSL+K SL+   P+ KH K+VQWM
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM

Query:  DFSGKELVEIREFE
        DFSGKELVEIREFE
Subjt:  DFSGKELVEIREFE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M2C9 Uncharacterized protein

3.82e-58

78.63

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV
        MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTSVSIV+T E KQECRD   DK QE EYGIKSSLRK+SL+ G  + KH K+V
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE

A0A1S4DZ54 uncharacterized protein LOC103492420

8.99e-57

77.78

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV
        MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E KQECRD   DK QE EYGIKSSLRK SL+ G  + KH K+V
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE

A0A5D3CDR2 Uncharacterized protein

4.74e-57

77.78

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV
        MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E KQECRD   DK QE EYGIKSSLRK SL+ G  + KH K+V
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE

A0A6J1D1Z7 uncharacterized protein LOC111016556

5.26e-78

100

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM
        MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM

Query:  DFSGKELVEIREFE
        DFSGKELVEIREFE
Subjt:  DFSGKELVEIREFE

A0A6J1HTN7 uncharacterized protein LOC111467718

7.34e-43

66.67

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM
        MRFWMCKIHCPSS CLCQPSP I++TGSV L L+NSPHLPS    VIGTS S V+T E K+    DK  E E+G KSSLRK + + G  + KH K VQWM
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWM

Query:  DFSGKELVEIREFE
        DFSGKEL EIREFE
Subjt:  DFSGKELVEIREFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G55475.1 unknown protein

2.0e-05

49.09

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Query:  DDKEQEPE-----YGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE
        D KE+E +       +KSSLRK        E +  KKVQW+D  GKEL EIREFE
Subjt:  DDKEQEPE-----YGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE

AT3G13480.1 unknown protein

9.1e-14

37.32

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Query:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENS-----------------------PHLPSE---VEAVIGTSVSIVDTFEFKQECRDDKEQEPEYG
        MR  +CKI CPS  C C+PSP I  +GS  LKLEN+                        H+  E   V+ V G    +V   +   E + ++E+    G
Subjt:  MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENS-----------------------PHLPSE---VEAVIGTSVSIVDTFEFKQECRDDKEQEPEYG

Query:  --IKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE
          +KSSL+K  L       K  KKVQW+D  GKEL EIREFE
Subjt:  --IKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE

Sequences

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CDS sequence

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ATGAGGTTTTGGATGTGTAAGATCCACTGTCCTTCATCCTTTTGCCTCTGCCAACCTTCCCCTCAAATAAATACCACTGGATCAGTACCACTGAAATTGGAAAACTCACC
ACATTTGCCTTCAGAAGTTGAGGCAGTCATTGGAACTTCTGTTTCCATTGTTGATACCTTTGAATTCAAGCAAGAGTGCAGAGATGACAAAGAGCAGGAACCTGAGTATG
GAATCAAGAGCAGTCTGAGGAAGACAAGTTTGAAGTTGGGTGCCCCGGAGGGGAAACATGCGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATC
AGGGAATTTGAA

mRNA sequence

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Protein sequence

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MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEI
REFE

MC06g0873 (gene) of Bitter gourd (Dali-11) v1 genome