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MC06g0968 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g0968
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionF-box protein At3g07870-like
Genome locationMC06:8611861..8612319
RNA-Seq ExpressionMC06g0968
SyntenyMC06g0968
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132431.1 F-box protein At3g07870-like [Momordica charantia]2.57e-4155.84Show/hide
Query:  PELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDS----NLQGIDMGGRSSVASFSFHSN-FPFASISIIDSCNGLLCCYL
        P++IQLIFSKL F NLP CRLVCKAWNN +LTC  H  IS+S+LF+ HISP +     +L    +G  SS+ SFSFH + F    ISII+SCNGLLCC  
Subjt:  PELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDS----NLQGIDMGGRSSVASFSFHSN-FPFASISIIDSCNGLLCCYL

Query:  VHERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLS
          +RT        ILNPMTNEY   P S  D+  Y +G GFS KTKQYKL R S
Subjt:  VHERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLS

XP_022143297.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]1.44e-4758.9Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPIS-SSSLFFIHISPQDSNLQGIDM-----GGRSSVASFSFHSNFPFAS--ISIIDSCNG
        E+  ELI LIFSKL FVNLPSCRLVCKAW+++VLT   HP IS S+ LF  H    D NLQ + +     GG  +VA F FH +F  +S  ISI++ CNG
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPIS-SSSLFFIHISPQDSNLQGIDM-----GGRSSVASFSFHSNFPFAS--ISIIDSCNG

Query:  LLCCYLVHERTARPPREPF---ILNPMTNEYFKPPFSNA--DVWYYCFGFGFSLKTKQYKLTR
        LLCC   H  T  PP E     ILNPMTNEYFKPP SNA  D WYYC+ FGFS KTKQYKL R
Subjt:  LLCCYLVHERTARPPREPF---ILNPMTNEYFKPPFSNA--DVWYYCFGFGFSLKTKQYKLTR

XP_022154078.1 F-box/LRR-repeat protein At2g43260-like [Momordica charantia]1.23e-108100Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVH
        EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVH
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVH

Query:  ERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF
        ERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF
Subjt:  ERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]2.47e-3451.23Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHI-SPQDSNLQGIDMG-----GRSSVASFSFHSNFPFAS--ISIIDSCNG
        E+ P+++QLIFSKL F NLP+CRLV   WNNLVL+C   P IS S+LFF H  S +D NL  +D+      G S+VASF+FH N    S  ISII+SC+G
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHI-SPQDSNLQGIDMG-----GRSSVASFSFHSNFPFAS--ISIIDSCNG

Query:  LLCCYLV-HERTARPPREPFILNPMTNEYFKPPF--SNAD-VWYYCFGFGFSLKTKQYKLTR
        L+   +    R    P    +LNPMTNEYFK P   S  D V  Y +G GFS +TKQYKL R
Subjt:  LLCCYLV-HERTARPPREPFILNPMTNEYFKPPF--SNAD-VWYYCFGFGFSLKTKQYKLTR

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]1.87e-3348.8Show/hide
Query:  EVLPE-LIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQ------DSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGL
        E+ P+ +IQ+I SK+   NLPSCRLVCKAWNNLVLTC   PP+  SSL   +  P       D NL+ ++  G SSV SF+FH  F  +SISII+SCNGL
Subjt:  EVLPE-LIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQ------DSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGL

Query:  LCCYLVHERTARPPREPF-ILNPMTNEYFKPPFSNADVWYYC-----FGFGFSLKTKQYKLTRLSF
        L   +   ++  P      ILNPMTNEYFK P   +     C     +G GFS +TKQYK+ R SF
Subjt:  LCCYLVHERTARPPREPF-ILNPMTNEYFKPPFSNADVWYYC-----FGFGFSLKTKQYKLTRLSF

TrEMBL top hitse value%identityAlignment
A0A0A0M1M5 F-box domain-containing protein5.58e-3045.78Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHI-SPQDSNLQGIDMG-----GRSSVASFSFHSNFPFAS--ISIIDSCNG
        E+ P+++QLIFSKL F NLP+CRLV   WNNL+ +C   P IS S LFF    S +  NL  ++       G S+VASF+FH +    S  I+II+SC+G
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHI-SPQDSNLQGIDMG-----GRSSVASFSFHSNFPFAS--ISIIDSCNG

Query:  LLCCYLVHERTARPPREPFI--LNPMTNEYFKPPFSNAD---VWYYCFGFGFSLKTKQYKLTRLSF
        L+   ++++R  R  R   +  LNP+TNEYFK P S +    V  YC+G GFS  T QYKL R  F
Subjt:  LLCCYLVHERTARPPREPFI--LNPMTNEYFKPPFSNAD---VWYYCFGFGFSLKTKQYKLTRLSF

A0A5D3CIX9 Putative F-box protein2.97e-2944.24Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHI-SPQDSNLQGIDMG-----GRSSVASFSFHSNFPFAS--ISIIDSCNG
        E+ P+++Q IFSK+ F NLP+CRLV + WNNL+ +C   P  S   LFF    S +  NL  ++       G S VASF+FH +F  AS  I+II+SC+G
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHI-SPQDSNLQGIDMG-----GRSSVASFSFHSNFPFAS--ISIIDSCNG

Query:  LLCCYLVHERTARPPREPF-ILNPMTNEYFKPP---FSNADVWYYCFGFGFSLKTKQYKLTRLSF
        L+   +   R     R+   +LNP+TNEYFK P        V  YC+G GFS KT QYKL R  F
Subjt:  LLCCYLVHERTARPPREPF-ILNPMTNEYFKPP---FSNADVWYYCFGFGFSLKTKQYKLTRLSF

A0A6J1BS93 F-box protein At3g07870-like1.25e-4155.84Show/hide
Query:  PELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDS----NLQGIDMGGRSSVASFSFHSN-FPFASISIIDSCNGLLCCYL
        P++IQLIFSKL F NLP CRLVCKAWNN +LTC  H  IS+S+LF+ HISP +     +L    +G  SS+ SFSFH + F    ISII+SCNGLLCC  
Subjt:  PELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDS----NLQGIDMGGRSSVASFSFHSN-FPFASISIIDSCNGLLCCYL

Query:  VHERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLS
          +RT        ILNPMTNEY   P S  D+  Y +G GFS KTKQYKL R S
Subjt:  VHERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLS

A0A6J1CQE2 F-box/kelch-repeat protein At3g06240-like6.96e-4858.9Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPIS-SSSLFFIHISPQDSNLQGIDM-----GGRSSVASFSFHSNFPFAS--ISIIDSCNG
        E+  ELI LIFSKL FVNLPSCRLVCKAW+++VLT   HP IS S+ LF  H    D NLQ + +     GG  +VA F FH +F  +S  ISI++ CNG
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPIS-SSSLFFIHISPQDSNLQGIDM-----GGRSSVASFSFHSNFPFAS--ISIIDSCNG

Query:  LLCCYLVHERTARPPREPF---ILNPMTNEYFKPPFSNA--DVWYYCFGFGFSLKTKQYKLTR
        LLCC   H  T  PP E     ILNPMTNEYFKPP SNA  D WYYC+ FGFS KTKQYKL R
Subjt:  LLCCYLVHERTARPPREPF---ILNPMTNEYFKPPFSNA--DVWYYCFGFGFSLKTKQYKLTR

A0A6J1DJA3 F-box/LRR-repeat protein At2g43260-like5.97e-109100Show/hide
Query:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVH
        EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVH
Subjt:  EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVH

Query:  ERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF
        ERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF
Subjt:  ERTARPPREPFILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGTTTTACCAGAACTGATTCAGTTGATATTCTCGAAACTTTCCTTTGTGAACTTACCCAGTTGCAGGCTCGTTTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAA
CTCCCATCCTCCCATCTCAAGTTCCAGCCTCTTTTTTATCCATATTTCTCCGCAGGATAGCAATCTCCAAGGCATAGACATGGGAGGGAGGAGCAGTGTTGCCTCGTTTA
GCTTCCATTCTAATTTCCCCTTTGCCAGTATCTCTATTATCGATTCATGTAATGGACTCCTCTGTTGTTATCTTGTCCATGAAAGAACCGCAAGGCCACCTCGTGAACCT
TTCATATTGAATCCCATGACAAATGAGTACTTTAAACCTCCCTTCTCGAATGCAGATGTTTGGTATTATTGTTTCGGATTTGGGTTTAGTCTTAAGACAAAGCAGTACAA
ATTAACAAGACTCTCCTTT
mRNA sequenceShow/hide mRNA sequence
GAGGTTTTACCAGAACTGATTCAGTTGATATTCTCGAAACTTTCCTTTGTGAACTTACCCAGTTGCAGGCTCGTTTGTAAAGCATGGAACAATCTGGTTTTAACTTGTAA
CTCCCATCCTCCCATCTCAAGTTCCAGCCTCTTTTTTATCCATATTTCTCCGCAGGATAGCAATCTCCAAGGCATAGACATGGGAGGGAGGAGCAGTGTTGCCTCGTTTA
GCTTCCATTCTAATTTCCCCTTTGCCAGTATCTCTATTATCGATTCATGTAATGGACTCCTCTGTTGTTATCTTGTCCATGAAAGAACCGCAAGGCCACCTCGTGAACCT
TTCATATTGAATCCCATGACAAATGAGTACTTTAAACCTCCCTTCTCGAATGCAGATGTTTGGTATTATTGTTTCGGATTTGGGTTTAGTCTTAAGACAAAGCAGTACAA
ATTAACAAGACTCTCCTTT
Protein sequenceShow/hide protein sequence
EVLPELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDSNLQGIDMGGRSSVASFSFHSNFPFASISIIDSCNGLLCCYLVHERTARPPREP
FILNPMTNEYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSF