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MC06g1309 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g1309
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNase H domain-containing protein
Genome locationMC06:19966604..19966939
RNA-Seq ExpressionMC06g1309
SyntenyMC06g1309
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.05e-2038.39Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI
        W     TGGIGW++RD  G+  +A C  I  ++ + +LE MAICEG + +++    P   ESDSLE + LL+   +D T+I WL+ E      D  ++S+
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI

Query:  HHIARVGKDLAH
         HI+R    +AH
Subjt:  HHIARVGKDLAH

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.68e-1332.43Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI
        W+   G GG+GW+IR+   +  +AG   I D +++ +LE MAI  G + +        I ES+SLE + L+ G  +++T+I WL+ + K     A +   
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI

Query:  HHIARVGKDLA
         H+ R G  +A
Subjt:  HHIARVGKDLA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.02e-1538.94Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKE-GGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVIS
        W+D    GGIGW+IR WDG    AG  F+     VK LE  AI EG + L   G   P   E+DS EV  LLN   EDLTK  W++ E         +++
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKE-GGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVIS

Query:  IHHIARVGKDLAH
           + R     AH
Subjt:  IHHIARVGKDLAH

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.10e-1835.83Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAE--------SDSLEVVRLLNGDAEDLTKIRWLINEAKTRA
        W     TGGIGW++RD  G+  +A C  I  ++ + +LE MAICEG + +++    P   E        SDSLE + LL+   +D T+I WL+ E     
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAE--------SDSLEVVRLLNGDAEDLTKIRWLINEAKTRA

Query:  SDAGVISIHHIARVGKDLAH
         D  ++S+ HI+R    +AH
Subjt:  SDAGVISIHHIARVGKDLAH

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.86e-1238.05Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLE-VVRLLNGDAEDLTKIRWLINEAKTRASDAGVIS
        WN  +   G+GWV  D   +   AG  F+   Q+V  LE +AIC G + L        + ESD LE V+ LLN D  DL+++ +   EAK R  + GVIS
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLE-VVRLLNGDAEDLTKIRWLINEAKTRASDAGVIS

Query:  IHHIARVGKDLAH
          H+ R    LA+
Subjt:  IHHIARVGKDLAH

TrEMBL top hitse value%identityAlignment
A0A5N5GSQ0 RNase H domain-containing protein8.05e-1135.24Show/hide
Query:  GGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISIHHIARVG
        GG+  V+RD+DG    A      D      +E +A   GF+   E GF+  I ESDSL+++  LNG + DL+ +R++I +AKT       +S  +I R  
Subjt:  GGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISIHHIARVG

Query:  KDLAH
         ++AH
Subjt:  KDLAH

A0A6J1CP26 uncharacterized protein LOC1110134125.08e-2138.39Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI
        W     TGGIGW++RD  G+  +A C  I  ++ + +LE MAICEG + +++    P   ESDSLE + LL+   +D T+I WL+ E      D  ++S+
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI

Query:  HHIARVGKDLAH
         HI+R    +AH
Subjt:  HHIARVGKDLAH

A0A6J1D5W1 uncharacterized protein LOC1110173298.15e-1432.43Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI
        W+   G GG+GW+IR+   +  +AG   I D +++ +LE MAI  G + +        I ES+SLE + L+ G  +++T+I WL+ + K     A +   
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISI

Query:  HHIARVGKDLA
         H+ R G  +A
Subjt:  HHIARVGKDLA

A0A6J1DNV9 uncharacterized protein LOC1110224031.95e-1538.94Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKE-GGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVIS
        W+D    GGIGW+IR WDG    AG  F+     VK LE  AI EG + L   G   P   E+DS EV  LLN   EDLTK  W++ E         +++
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKE-GGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVIS

Query:  IHHIARVGKDLAH
           + R     AH
Subjt:  IHHIARVGKDLAH

A0A6J1DSV1 uncharacterized protein LOC1110236083.92e-1835.83Show/hide
Query:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAE--------SDSLEVVRLLNGDAEDLTKIRWLINEAKTRA
        W     TGGIGW++RD  G+  +A C  I  ++ + +LE MAICEG + +++    P   E        SDSLE + LL+   +D T+I WL+ E     
Subjt:  WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAE--------SDSLEVVRLLNGDAEDLTKIRWLINEAKTRA

Query:  SDAGVISIHHIARVGKDLAH
         D  ++S+ HI+R    +AH
Subjt:  SDAGVISIHHIARVGKDLAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAATGATGGTCTCGGAACAGGAGGAATCGGTTGGGTGATTCGAGATTGGGATGGTCAAACTGGGCGTGCAGGTTGTCTCTTTATAGCTGACAAACAAGAGGTCAAATT
TTTGGAAACAATGGCTATTTGTGAAGGTTTTAAAGGTTTGAAGGAAGGAGGTTTTTACCCGAGTATAGCTGAATCGGACTCCCTCGAGGTCGTTCGTTTGCTGAATGGAG
ATGCTGAAGACCTCACTAAGATTCGATGGTTGATCAACGAGGCGAAAACTCGTGCTTCAGACGCCGGTGTAATTTCGATTCACCATATTGCGAGAGTTGGGAAAGACTTG
GCTCAT
mRNA sequenceShow/hide mRNA sequence
TGGAATGATGGTCTCGGAACAGGAGGAATCGGTTGGGTGATTCGAGATTGGGATGGTCAAACTGGGCGTGCAGGTTGTCTCTTTATAGCTGACAAACAAGAGGTCAAATT
TTTGGAAACAATGGCTATTTGTGAAGGTTTTAAAGGTTTGAAGGAAGGAGGTTTTTACCCGAGTATAGCTGAATCGGACTCCCTCGAGGTCGTTCGTTTGCTGAATGGAG
ATGCTGAAGACCTCACTAAGATTCGATGGTTGATCAACGAGGCGAAAACTCGTGCTTCAGACGCCGGTGTAATTTCGATTCACCATATTGCGAGAGTTGGGAAAGACTTG
GCTCAT
Protein sequenceShow/hide protein sequence
WNDGLGTGGIGWVIRDWDGQTGRAGCLFIADKQEVKFLETMAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTKIRWLINEAKTRASDAGVISIHHIARVGKDL
AH