; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC06g1679 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g1679
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationMC06:24208596..24208714
RNA-Seq ExpressionMC06g1679
SyntenyMC06g1679
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009526334.1 RNA polymerase alpha subunit [Hemsleya lijiangensis]1.69e-0467.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  YRIQ  NNFQDA+Y I  VF
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
YP_009751770.1 RNA polymerase subunit alpha [Herpetospermum pedunculosum]2.57e-0567.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINLYI LKI+RN  YRIQ  NNFQDA+Y I  +F
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
YP_009752022.1 RNA polymerase subunit alpha [Cionosicys macranthus]2.32e-0465Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  YRIQ  NNFQDA+Y I  +F
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
YP_009752782.1 RNA polymerase subunit alpha [Cyclantheropsis parviflora]1.24e-0467.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINLYI LKI+RN  YRIQ  N FQDA+Y I  VF
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
YP_010119766.1 RNA polymerase alpha subunit [Hemsleya zhejiangensis]1.69e-0467.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  YRIQ  NNFQDA+Y I  VF
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
TrEMBL top hitse value%identityAlignment
A0A346TMB8 DNA-directed RNA polymerase subunit alpha8.19e-0567.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  YRIQ  NNFQDA+Y I  VF
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
A0A346TMK5 DNA-directed RNA polymerase subunit alpha1.53e-0467.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  YRIQ  NNFQDA+Y I  VF
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
A0A6H0ERD4 DNA-directed RNA polymerase subunit alpha1.24e-0567.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINLYI LKI+RN  YRIQ  NNFQDA+Y I  +F
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
A0A6H0ESV8 DNA-directed RNA polymerase subunit alpha5.98e-0567.5Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINLYI LKI+RN  YRIQ  N FQDA+Y I  VF
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
A0A6H0ETH8 DNA-directed RNA polymerase subunit alpha1.12e-0465Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  YRIQ  NNFQDA+Y I  +F
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
SwissProt top hitse value%identityAlignment
Q4VZK3 DNA-directed RNA polymerase subunit alpha2.8e-0460Show/hide
Query:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
        ANL +PINL I LKI+RN  Y IQ  NNFQDA+Y +  +F
Subjt:  ANLFKPINLYIVLKIDRNHRYRIQY-NNFQDANYLIVDVF
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTAACTTATTCAAGCCCATTAATTTGTATATTGTACTAAAGATTGATAGGAATCACAGATATCGCATACAATACAATAATTTTCAAGATGCAAATTATCTAATAGTTGA
TGTATTT
mRNA sequenceShow/hide mRNA sequence
GCTAACTTATTCAAGCCCATTAATTTGTATATTGTACTAAAGATTGATAGGAATCACAGATATCGCATACAATACAATAATTTTCAAGATGCAAATTATCTAATAGTTGA
TGTATTT
Protein sequenceShow/hide protein sequence
ANLFKPINLYIVLKIDRNHRYRIQYNNFQDANYLIVDVF