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MC06g1758 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g1758
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
Genome locationMC06:24852921..24854967
RNA-Seq ExpressionMC06g1758
SyntenyMC06g1758
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR033871 - Sm-like protein LSm5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6717542.1 hypothetical protein I3842_04G105700 [Carya illinoinensis]2.90e-47100Show/hide
Query:  ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
Subjt:  ANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

KYP49644.1 U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan]3.79e-48100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

PON51961.1 LSM domain/archaea-type [Parasponia andersonii]3.16e-48100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

QCD83904.1 U6 snRNA-associated Sm-like protein LSm5 [Vigna unguiculata]2.67e-4796.2Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAI++
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

XP_004504703.1 sm-like protein LSM5 [Cicer arietinum]3.38e-4798.72Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

TrEMBL top hitse value%identityAlignment
A0A0B0NQ45 U6 snRNA-associated Sm-like protein LSm51.64e-4798.72Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

A0A151S4E6 U6 snRNA-associated Sm-like protein LSm51.84e-48100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

A0A2P5BT44 U6 snRNA-associated Sm-like protein LSm51.53e-48100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

A0A2P5WT65 U6 snRNA-associated Sm-like protein LSm51.64e-4798.72Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

A0A4D6L654 U6 snRNA-associated Sm-like protein LSm51.29e-4796.2Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAI++
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVS

SwissProt top hitse value%identityAlignment
P62322 U6 snRNA-associated Sm-like protein LSm57.8e-2877.33Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI ++
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

Q2HJH0 U6 snRNA-associated Sm-like protein LSm57.8e-2877.33Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI ++
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

Q5R628 U6 snRNA-associated Sm-like protein LSm57.8e-2877.33Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI ++
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

Q9FKB0 Sm-like protein LSM51.2e-3694.87Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm57.8e-2877.33Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI ++
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein3.9e-0637.33Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSN
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L +ILL G+NI ++ N
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSN

AT3G14080.1 Small nuclear ribonucleoprotein family protein1.6e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

AT3G14080.2 Small nuclear ribonucleoprotein family protein1.6e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

AT4G30330.1 Small nuclear ribonucleoprotein family protein3.0e-0637.33Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSN
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L +ILL G+NI ++ N
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSN

AT5G48870.1 Small nuclear ribonucleoprotein family protein8.6e-3894.87Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACAATCCTTCACAGCTACTACCCTCGGAGTTAATCGACCGATGTATAGGGTCCAAAATATGGGTCATTATGAAAGGCGACAAGGAGCTCGTGGGTACTCTCAG
GGGATTCGATGTTTATGTCAACATGGTTCTCGAAGACGTCACTGAATATGAGATTACTGCTGAGGGAAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ATATTGCTATTGTAAGTAACAATCAGTCT
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACAATCCTTCACAGCTACTACCCTCGGAGTTAATCGACCGATGTATAGGGTCCAAAATATGGGTCATTATGAAAGGCGACAAGGAGCTCGTGGGTACTCTCAG
GGGATTCGATGTTTATGTCAACATGGTTCTCGAAGACGTCACTGAATATGAGATTACTGCTGAGGGAAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ATATTGCTATTGTAAGTAACAATCAGTCT
Protein sequenceShow/hide protein sequence
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSNNQS