; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC06g1768 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g1768
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationMC06:24940158..24943967
RNA-Seq ExpressionMC06g1768
SyntenyMC06g1768
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036274.1 Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]3.31e-7687.12Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
         SSPDPE ELD+AMEDEAFRI S KISSIIGS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]8.83e-90100Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
        GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

XP_022931150.1 zinc finger HIT domain-containing protein 3 [Cucurbita moschata]9.50e-7686.36Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
         SSPDPE ELD+AMEDEAFRI S KISSI+GS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]8.13e-7787.88Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
         SSPDPE ELD+AMEDEAFRI SSKISSIIGS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

XP_023533050.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo]1.16e-7687.12Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSE+RNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
         SSPDPE ELD+AMEDEAFRI SSKISSIIGS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein2.26e-7485.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG+ VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE LQK I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA

Query:  IGSSPDPETELDRAMEDEAFRIFSSKISSIIGS
        I SSPDPETE+D+AMEDEAFRIFSSKISSII S
Subjt:  IGSSPDPETELDRAMEDEAFRIFSSKISSIIGS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X11.31e-7385.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS  DQSTAPNGS VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE L+K I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA

Query:  IGSSPDPETELDRAMEDEAFRIFSSKISSIIGS
        I SS DPETELD+AMEDEAFRIFSSKISSII S
Subjt:  IGSSPDPETELDRAMEDEAFRIFSSKISSIIGS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X14.28e-90100Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
        GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

A0A6J1ESW0 zinc finger HIT domain-containing protein 34.60e-7686.36Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
         SSPDPE ELD+AMEDEAFRI S KISSI+GS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

A0A6J1JZX2 zinc finger HIT domain-containing protein 33.94e-7787.88Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS
         SSPDPE ELD+AMEDEAFRI SSKISSIIGS
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSIIGS

SwissProt top hitse value%identityAlignment
Q15649 Zinc finger HIT domain-containing protein 37.1e-0727.34Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE
        C +C E P KY+CP C  PYCS+VCF+KHKE   P  +PV    +S  P            + S+ D  +  +++ + +    L+ +  S+ +R+ L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE

Query:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII
         L++L+  +    D    +   M++  F  F+     I+
Subjt:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII

Q2KIH1 Zinc finger HIT domain-containing protein 31.3e-0559.46Show/hide
Query:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP
        G   C VC E P KY+CP C  PYCSL CF+KHK  P
Subjt:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)2.1e-0626.62Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE
        C +C E P KY+CP C  PYCS+ CF+KHKE   P  +PV    +S  P            + S+ D  +  +++ + +    L+ +  S+ +R+ L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE

Query:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII
         L++L+  +    D    +   M++  F  F+     I+
Subjt:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII

Q6UIM2 Zinc finger HIT domain-containing protein 3 (Fragment)1.1e-0425.38Show/hide
Query:  KYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        KY+CP C  PYCS+ CF+KHKE   P  +PV    +S  P            + S+ D  +  +++ + +    L+ +  S+ +R+ L +  L++L+  +
Subjt:  KYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKISSII
            D    +   M++  F  F+     I+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKISSII

Q9CQK1 Zinc finger HIT domain-containing protein 37.9e-0626.67Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQK
        C VC E P KY+CP C  PYCS+ CF+KHKE       P  K    P    ++S   + S+ D  +  +++ + +    L+ +  S  +R+ L +  L++
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQK

Query:  LICAIGSSPDPETELDRAMEDEAFRIFSSKISSII
        L+ ++    +    +   M++  F  F+     I+
Subjt:  LICAIGSSPDPETELDRAMEDEAFRIFSSKISSII

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein2.6e-2846.2Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGS---------------------------------LVDRPICVEDQSEVLEK
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP         P  S                                  V RPI VE++  +LEK
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGS---------------------------------LVDRPICVEDQSEVLEK

Query:  SQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII
        +Q EAIASSSEIR  L DE LQKLI +I SS +P  ELD AM  EAFR F+ KI S I
Subjt:  SQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII

AT4G28820.2 HIT-type Zinc finger family protein4.4e-2845.86Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSL--------------------------------VDRPICVEDQSEVLEKS
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP         P                                    V RPI VE++  +LEK+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSL--------------------------------VDRPICVEDQSEVLEKS

Query:  QLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII
        Q EAIASSSEIR  L DE LQKLI +I SS +P  ELD AM  EAFR F+ KI S I
Subjt:  QLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKISSII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTTTGCCTTGCACCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGT
TCCTTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTCGAAGACCAAAGTGAAGTACTTGAAAAGTCGC
AGCTGGAGGCCATCGCTTCTTCCTCAGAAATACGCAATACTTTGAATGATGAAAGCCTTCAGAAGCTCATCTGTGCCATTGGTAGTTCACCGGATCCAGAAACCGAACTT
GATAGAGCTATGGAAGACGAAGCATTTCGCATATTCAGCAGCAAGATATCATCGATCATTGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
TACGGTATAACGATTTTGTCCAGAAAACTGAAAACCCTTCGTCGGACGGTGAAGCCAGGCGCCAAATCGATTTGTTGCTTGATCTGAGAGCCGGCGATTTCGCTTCTCGA
ACCCGAAATCGCATTTGGGACTGAAAATTGAACATTCTATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTTTGCCTTGCACCT
TACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGTTCCTTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAAT
ATGTGTCGAAGACCAAAGTGAAGTACTTGAAAAGTCGCAGCTGGAGGCCATCGCTTCTTCCTCAGAAATACGCAATACTTTGAATGATGAAAGCCTTCAGAAGCTCATCT
GTGCCATTGGTAGTTCACCGGATCCAGAAACCGAACTTGATAGAGCTATGGAAGACGAAGCATTTCGCATATTCAGCAGCAAGATATCATCGATCATTGGCTCCTAGCCC
CAGCAATCACGGATGGAGGACAGAAAACACTAGTTCGAAGACATCCGTATAATCAACGGGGAATTTCTGCCCCCTTACCTTAAGTACTCAGCTCAGCAGATGCTGGAATC
AAGGATGTGGAAACGACACTTCTTCTCGGAATGAAGTAAGCTGGGGGAGAGACCATCCAAGCGTTTAGCTGAAATGTGTAATGGTGATAGATTTGACAAGTTTAGCAATG
ATGTATGGTCTTCTCGTCTTTTCCTCTTTTTAAACGCTGTGTTTGTGTATTCAAACTCTCGTGTGTTTAATGCTTTCTAGGCTCAATAGTTTGTAGGAAGTCATGTTTTT
GACTGAGTGCAATTGAATGATCAAACCGAAAGTTGAACGTTTTATATCATGTTGCTCCCGAAAACTTTGCTCCGACTCACAAAGTTAGAAATTGAATTTGGAACGACTTT
TCCATACGAAAAGTACTGTTATTTGAAGCACTCGCTCATACTTTTGGTTTACAAAAATGCTGAAAATGAAATTAGAAGTATCAATAAGATTTGAAAGAGATGATATATGA
AATCTAGCCATTTGAATTTTCAAAACATGAGTACGAGTTAAAGATGTTGTAAACCATATAGGTGAAATATATGATTATCTCAAAATTTTGATGCATTACAGTTCTAATCA
TTAGGAGAAGAACAGTTTGGAGAACATTGGAAACACATCTCCAACAAAGGCTACCCAAAGAACTACCTTCAGAATCAAAAAGCAAGTATATATTGCTTAAAGTTTGATAA
TGGAGAAAGTATTTCCAACTCCAAAATGTGAAAGAAGACATTTCTTCGAACAGTTTCAAACACACTTCTGATAATCTTCATCACATATATAAACCTTCAGGCACACCTTC
TTTCTTCTTGTACATAACCTTCTCCTTTGCCTTTTTGAAGTCGGCATGTGTGACCTGAAGTGGAAGACAACATCAAAAGAACAGCTTAAGCCTCACTTCACTGTCATTTA
ATCAACTCGATGTACTAAACGACTTAGATAAACTGTTCAGCCCCCATCCATTATCTCTAGCAATATAGACCCGAAATTTCATGAAGTTTGATAGTCTAAAAACTTGAAAA
TTATTCATCAAAGTCTAAAGATGTGAATTTTTAAAACCAACACCACCACAGATTCTTTGAAACTAAGTTAATCAATCATTAGAGGTGGAAAAGTTGTATCCCATCATAGT
TCTTAGAAAACTGAGGCAACTATTACCTTCATGCGCCTTTCCCTCAGAGCAAGCAACCCAGCTTCAGTACATATGGCCTTTATATCAGCACCAGAGAATTCATCTTTGGT
CATCACAAATTCCTCTAAGTTGACATCATCTGCCAATGTCATTCTTGATGTGTGAATCTGCAAGTCAG
Protein sequenceShow/hide protein sequence
MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETEL
DRAMEDEAFRIFSSKISSIIGS