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MC06g1959 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g1959
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationMC06:27071727..27072879
RNA-Seq ExpressionMC06g1959
SyntenyMC06g1959
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]2.92e-4969.84Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFG
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SDAV P AL+S     +     DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK G
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFG

Query:  LNPPKDIETLLKAGEVQLECLWDGRV
        LNPPK+IE+LLK G+VQLECLW  R+
Subjt:  LNPPKDIETLLKAGEVQLECLWDGRV

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]3.80e-5071.65Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  SDAV P ALVS     +     DDY  SEN LRQFDMN+AYGPCLGMTRM RWERA   
Subjt:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF

Query:  GLNPPKDIETLLKAGEVQLECLWDGRV
        GLNPPKDI TLLKAG+VQLECLWD RV
Subjt:  GLNPPKDIETLLKAGEVQLECLWDGRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]4.64e-5172.44Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS     +     DDY ESENMLRQFDMN AYGPCLGMTRM RWERA   
Subjt:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF

Query:  GLNPPKDIETLLKAGEVQLECLWDGRV
        GLNPPKDI TLLKAG+VQLECLWD RV
Subjt:  GLNPPKDIETLLKAGEVQLECLWDGRV

XP_022156193.1 DNA polymerase delta subunit 4 [Momordica charantia]9.77e-7793.02Show/hide
Query:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSL         DDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
Subjt:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGEVQLECLWDGRV
        KFGLNPPKDIETLLKAGEVQLECLWDGRV
Subjt:  KFGLNPPKDIETLLKAGEVQLECLWDGRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]2.92e-4969.84Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFG
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SD V P AL+S     +     DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK G
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFG

Query:  LNPPKDIETLLKAGEVQLECLWDGRV
        LNPPK+IETLLK G+VQLECLW  R+
Subjt:  LNPPKDIETLLKAGEVQLECLWDGRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein1.84e-5071.65Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  SDAV P ALVS     +     DDY  SEN LRQFDMN+AYGPCLGMTRM RWERA   
Subjt:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF

Query:  GLNPPKDIETLLKAGEVQLECLWDGRV
        GLNPPKDI TLLKAG+VQLECLWD RV
Subjt:  GLNPPKDIETLLKAGEVQLECLWDGRV

A0A1S3CT23 DNA polymerase delta subunit 42.25e-5172.44Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS     +     DDY ESENMLRQFDMN AYGPCLGMTRM RWERA   
Subjt:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF

Query:  GLNPPKDIETLLKAGEVQLECLWDGRV
        GLNPPKDI TLLKAG+VQLECLWD RV
Subjt:  GLNPPKDIETLLKAGEVQLECLWDGRV

A0A5A7UNL0 DNA polymerase delta subunit 42.25e-5172.44Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS     +     DDY ESENMLRQFDMN AYGPCLGMTRM RWERA   
Subjt:  SARGGMKDFYKQTKKGGISKPKP-KPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKF

Query:  GLNPPKDIETLLKAGEVQLECLWDGRV
        GLNPPKDI TLLKAG+VQLECLWD RV
Subjt:  GLNPPKDIETLLKAGEVQLECLWDGRV

A0A6J1DPY8 DNA polymerase delta subunit 44.73e-7793.02Show/hide
Query:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSL         DDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
Subjt:  MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGEVQLECLWDGRV
        KFGLNPPKDIETLLKAGEVQLECLWDGRV
Subjt:  KFGLNPPKDIETLLKAGEVQLECLWDGRV

A0A6J1H180 uncharacterized protein LOC1114591431.42e-4969.84Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFG
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SD V P AL+S     +     DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK G
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFG

Query:  LNPPKDIETLLKAGEVQLECLWDGRV
        LNPPK+IETLLK G+VQLECLW  R+
Subjt:  LNPPKDIETLLKAGEVQLECLWDGRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 42.2e-0843.86Show/hide
Query:  DDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQLE
        ++ ++ E +L  FD  + YGP LGMTRM+RW+RA+ F LNPP+ +  +L   E   E
Subjt:  DDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKAGEVQLE

Q3T0X9 DNA polymerase delta subunit 43.3e-0944.07Show/hide
Query:  ESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GEVQLEC-LW
        E   +LRQFD+   YGPC G+TR++RW RA + GL PP ++  +L++  G+ + +C LW
Subjt:  ESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GEVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 44.8e-0853.49Show/hide
Query:  MLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA
        +LRQFD+   YGPC G+TR++RW RA + GL PP ++  +LKA
Subjt:  MLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 44.4e-0946.03Show/hide
Query:  DYSESE-NMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GEVQLEC-LW
        D  E+E  +LRQFD+   YGPC G+TR++RW RA++ GL PP ++  +LK   G+ + +C LW
Subjt:  DYSESE-NMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GEVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 48.4e-3258.33Show/hide
Query:  MATSARGGMKDFYKQTKK---GGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWE
        MAT+A+  +K FYKQTK    GGIS  K KPSSRK  +P +AAA  SD   P AL+S      LN   +DY + E MLRQFDMN  YGPCLGMTR++RWE
Subjt:  MATSARGGMKDFYKQTKK---GGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWE

Query:  RARKFGLNPPKDIETLLKAGEVQLECLWDGRV
        RA + G+NPP +IE LLK G+VQ +CLW GRV
Subjt:  RARKFGLNPPKDIETLLKAGEVQLECLWDGRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACATCGGCGCGAGGAGGGATGAAGGATTTCTACAAGCAAACGAAAAAGGGCGGAATCTCTAAGCCCAAGCCCAAGCCCTCTTCCCGGAAGACCAAATCTCCGGC
CAACGCTGCCGCTTCCGCCTCCGACGCCGTTCACCCGCCGGCTCTCGTTTCTTCGTTAGTTTGTTTCATTTTGAATTTTGTTTTAGATGATTACAGCGAGTCTGAGAATA
TGCTGAGGCAATTTGATATGAACAGTGCCTATGGTCCTTGCCTTGGAATGACTAGAATGGAACGGTGGGAGCGTGCTCGTAAGTTTGGTTTGAACCCTCCAAAAGACATT
GAGACACTCTTAAAGGCTGGCGAAGTGCAGTTAGAGTGCTTGTGGGATGGCCGAGTT
mRNA sequenceShow/hide mRNA sequence
GGAAGAGTTGAGTTCAGATCGAGAAGAACAAATTCAAAATTTTGAAAATCAGAGATGGCGACATCGGCGCGAGGAGGGATGAAGGATTTCTACAAGCAAACGAAAAAGGG
CGGAATCTCTAAGCCCAAGCCCAAGCCCTCTTCCCGGAAGACCAAATCTCCGGCCAACGCTGCCGCTTCCGCCTCCGACGCCGTTCACCCGCCGGCTCTCGTTTCTTCGT
TAGTTTGTTTCATTTTGAATTTTGTTTTAGATGATTACAGCGAGTCTGAGAATATGCTGAGGCAATTTGATATGAACAGTGCCTATGGTCCTTGCCTTGGAATGACTAGA
ATGGAACGGTGGGAGCGTGCTCGTAAGTTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCTGGCGAAGTGCAGTTAGAGTGCTTGTGGGATGGCCGAGT
T
Protein sequenceShow/hide protein sequence
MATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDI
ETLLKAGEVQLECLWDGRV