CuGenDBv2

Gene ID	MC06g2040
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	MC06:27898808..27899088
RNA-Seq Expression	MC06g2040
Synteny	MC06g2040
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.22e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + R +A   + P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.21e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.01e-13

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.20e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

9.96e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

1.08e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + R +A   + P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.07e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

1.07e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

4.90e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein

4.82e-14

38.3

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Query:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN
        F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P W++ P WC +C  + E   H+F+ CP S  +W+
Subjt:  FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

8.7e-07

36.36

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Query:  YKPLW-KTTYPKKKFLNWELVHTCLKLQRRCPWWSIP-PCWCCLCKANFESQAHIFMDCPSSSAIW
        YK +W K   PK  F+ W +    L  + R   W +  P  C LC ++ ES+AH+F +CP   A+W
Subjt:  YKPLW-KTTYPKKKFLNWELVHTCLKLQRRCPWWSIP-PCWCCLCKANFESQAHIFMDCPSSSAIW

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.1e-05

33.33

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Query:  YKPLW-KTTYPKKKFLNWELVHTCLKLQRRCPWWSIP-PCWCCLCKANFESQAHIFMDCPSSSAIW
        +K +W K   PK  F+ W +    L  + R   W +  P  C LC A+ +S+AH+F +C  S  +W
Subjt:  YKPLW-KTTYPKKKFLNWELVHTCLKLQRRCPWWSIP-PCWCCLCKANFESQAHIFMDCPSSSAIW

Sequences

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CDS sequence

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TTCACAACAAAAATCTTGACTCGACAGCTTGCATCAGGTTCGGTTCTCCCTATAGATGGCCTTTACAAACCTCTATGGAAGACCACATATCCAAAAAAAAAATTTCTAAA
CTGGGAACTCGTCCACACATGCCTCAAGCTGCAAAGAAGATGTCCATGGTGGTCTATCCCCCCTTGTTGGTGCTGTCTGTGCAAGGCAAATTTTGAATCTCAAGCTCACA
TTTTCATGGATTGCCCCTCCTCATCGGCAATATGGAATCATTTATTCTCTATTTTT

mRNA sequence

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Protein sequence

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FTTKILTRQLASGSVLPIDGLYKPLWKTTYPKKKFLNWELVHTCLKLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWNHLFSIF

MC06g2040 (gene) of Bitter gourd (Dali-11) v1 genome