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MC06g2196 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g2196
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNase H domain-containing protein
Genome locationMC06:29354949..29355239
RNA-Seq ExpressionMC06g2196
SyntenyMC06g2196
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]2.18e-1139.36Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEI
        +N+DAA  E  +L GLG V+RN+KG II    +   N G+V+M EA A+L  ++  +   +  + VE DS  V +L+  + G L EI WV+ +I
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEI

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]8.10e-1339.29Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDL
        LN DA+WSE +++GG+GW+L + +G I+L GN  +     +  LE M I+  ++ +      PI +E DS+EV +L+++ED DL
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.25e-1238.95Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIY
        LN +AAW      GG+GW+LR+ KG +I    R +    ++  LE MAI E +R +      PI +E DS+E   LL R+  D  EI W+++EI+
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIY

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.82e-2652.63Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFM-VSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEI
        LN DA+WS++   GG+GW++R+W G I+L GNRFV+ C +VK+LEA AILE +RNL  + V  P+ +E DS EV+ LL R+  DL +  WVV+EI
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFM-VSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.69e-1137.86Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQ--------VEMDSMEVDKLLRREDGDLLEITWVVK
        LN DAAW      GG+GW+LR+ KG +I    R +    ++  LE MAI E +R +      PIQ        +E DS+E   LL R+  D  EI W+++
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQ--------VEMDSMEVDKLLRREDGDLLEITWVVK

Query:  EIY
        EI+
Subjt:  EIY

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.09e-1238.95Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIY
        LN +AAW      GG+GW+LR+ KG +I    R +    ++  LE MAI E +R +      PI +E DS+E   LL R+  D  EI W+++EI+
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIY

A0A6J1CQG0 uncharacterized protein LOC1110132163.92e-1339.29Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDL
        LN DA+WSE +++GG+GW+L + +G I+L GN  +     +  LE M I+  ++ +      PI +E DS+EV +L+++ED DL
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDL

A0A6J1DNV9 uncharacterized protein LOC1110224033.30e-2652.63Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFM-VSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEI
        LN DA+WS++   GG+GW++R+W G I+L GNRFV+ C +VK+LEA AILE +RNL  + V  P+ +E DS EV+ LL R+  DL +  WVV+EI
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFM-VSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEI

A0A6J1DSV1 uncharacterized protein LOC1110236081.79e-1137.86Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQ--------VEMDSMEVDKLLRREDGDLLEITWVVK
        LN DAAW      GG+GW+LR+ KG +I    R +    ++  LE MAI E +R +      PIQ        +E DS+E   LL R+  D  EI W+++
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQ--------VEMDSMEVDKLLRREDGDLLEITWVVK

Query:  EIY
        EI+
Subjt:  EIY

V4RLS8 RNase H domain-containing protein (Fragment)2.59e-1141.24Show/hide
Query:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIYTF
        LN DAA +E   L GLG V+RN KG  +   N      G +++ EA AILE I+    +   P+ VE DS+ V +L+ R+    LEI WV+ EI  F
Subjt:  LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIYTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein3.3e-0433.33Show/hide
Query:  NIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNL-LFMVSYPIQVEMDSMEVDKLLRRED
        N DA W+   +  G+GWVLRN KG +  +G R +    SV   E  A+   + +L  F  +Y I  E DS  + ++L  ++
Subjt:  NIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNL-LFMVSYPIQVEMDSMEVDKLLRRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGAATATTGATGCGGCTTGGTCGGAGACTCAGCAGTTAGGGGGACTTGGGTGGGTCTTGCGTAATTGGAAAGGTGTCATCATTCTTGTAGGCAACCGTTTCGTCGATAA
TTGTGGGAGTGTGAAGATGTTGGAAGCTATGGCTATTCTGGAACGGATACGAAACCTGTTGTTTATGGTTTCTTATCCTATTCAGGTGGAAATGGACTCGATGGAGGTAG
ATAAGCTGTTGCGAAGGGAAGACGGTGATCTTCTTGAAATAACGTGGGTAGTCAAAGAAATTTACACCTTC
mRNA sequenceShow/hide mRNA sequence
CTGAATATTGATGCGGCTTGGTCGGAGACTCAGCAGTTAGGGGGACTTGGGTGGGTCTTGCGTAATTGGAAAGGTGTCATCATTCTTGTAGGCAACCGTTTCGTCGATAA
TTGTGGGAGTGTGAAGATGTTGGAAGCTATGGCTATTCTGGAACGGATACGAAACCTGTTGTTTATGGTTTCTTATCCTATTCAGGTGGAAATGGACTCGATGGAGGTAG
ATAAGCTGTTGCGAAGGGAAGACGGTGATCTTCTTGAAATAACGTGGGTAGTCAAAGAAATTTACACCTTC
Protein sequenceShow/hide protein sequence
LNIDAAWSETQQLGGLGWVLRNWKGVIILVGNRFVDNCGSVKMLEAMAILERIRNLLFMVSYPIQVEMDSMEVDKLLRREDGDLLEITWVVKEIYTF