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MC06g2227 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC06g2227
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionNucleolar protein 10
Genome locationMC06:29599573..29600023
RNA-Seq ExpressionMC06g2227
SyntenyMC06g2227
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACU15555.1 unknown [Glycine max]4.74e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        QK+SPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_008447412.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]3.51e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_011651438.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]3.51e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_022155661.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Momordica charantia]1.48e-2597.87Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_039070740.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus]3.51e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESP+GL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

TrEMBL top hitse value%identityAlignment
A0A0A0LCV0 Nucleolar protein 103.76e-2595.74Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        QKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A1S3BHD2 Nucleolar protein 101.70e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A2G9GIP1 Nucleolar protein 101.70e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A6J1DSC6 Nucleolar protein 107.18e-2697.87Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A7J7CYK9 Nucleolar protein 101.70e-2493.62Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

SwissProt top hitse value%identityAlignment
Q54J26 H/ACA ribonucleoprotein complex subunit 31.4e-1068.09Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQQ P ++
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

Q6BQP3 H/ACA ribonucleoprotein complex subunit NOP102.9e-1188.57Show/hide
Query:  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
        G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Subjt:  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ

Q6DRH5 H/ACA ribonucleoprotein complex subunit 33.2e-1068.89Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPP
        +K  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQ  P
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPP

Q6Q547 H/ACA ribonucleoprotein complex subunit NOP103.2e-1073.17Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
        +K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGL+P Q
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein7.9e-1785.11Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein5.6e-1885.11Show/hide
Query:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        +KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Subjt:  QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein7.3e-1886.96Show/hide
Query:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Subjt:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAAAGAATCACCTCTTGGTTTGGTCACGCAATCTGCCCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTT
GGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC
mRNA sequenceShow/hide mRNA sequence
CAGAAAGAATCACCTCTTGGTTTGGTCACGCAATCTGCCCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTT
GGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC
Protein sequenceShow/hide protein sequence
QKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY