CuGenDBv2

Gene ID	MC06g2256
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Genome location	MC06:29808634..29811800
RNA-Seq Expression	MC06g2256
Synteny	MC06g2256
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0034715 - pICln-Sm protein complex (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0000243 - commitment complex (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 IPR034102 - Small nuclear ribonucleoprotein D1

Homology

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GenBank top hits

e value

%identity

Alignment

GFP82007.1 small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum]

7.42e-68

98.18

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus]

9.02e-69

100

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_022771087.1 small nuclear ribonucleoprotein SmD1a-like [Durio zibethinus]

7.42e-68

98.18

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRPLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_022931093.1 small nuclear ribonucleoprotein SmD1b [Cucurbita moschata]

2.59e-68

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]

5.22e-68

98.18

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+P+GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LD16 Small nuclear ribonucleoprotein Sm D1

4.37e-69

100

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A1S3C0D0 Small nuclear ribonucleoprotein Sm D1

4.37e-69

100

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D1

4.37e-69

100

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A6J1EXE6 Small nuclear ribonucleoprotein Sm D1

1.25e-68

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

A0A6J1K070 Small nuclear ribonucleoprotein Sm D1

1.25e-68

99.09

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

SwissProt top hits

e value

%identity

Alignment

P62314 Small nuclear ribonucleoprotein Sm D1

5.5e-37

74.55

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q3ZC10 Small nuclear ribonucleoprotein Sm D1

5.5e-37

74.55

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q4R5F6 Small nuclear ribonucleoprotein Sm D1

5.5e-37

74.55

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q9SSF1 Small nuclear ribonucleoprotein SmD1a

1.3e-49

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

Q9SY09 Small nuclear ribonucleoprotein SmD1b

1.9e-50

92.73

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRG
        RFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRG
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRG

Query:  RGRGRGRGRG
        RGRGRGRGRG
Subjt:  RGRGRGRGRG

Arabidopsis top hits

e value

%identity

Alignment

AT1G20580.1 Small nuclear ribonucleoprotein family protein

1.4e-06

29.46

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        + L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+ +R+ ++PD L    +      R+K K  + G  +GRGRG 
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGR---GRGRG
         RG+   G GRG
Subjt:  GRGR---GRGRG

AT3G07590.1 Small nuclear ribonucleoprotein family protein

9.0e-51

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

AT3G07590.2 Small nuclear ribonucleoprotein family protein

9.0e-51

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR
        RFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGR
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGR

Query:  GRGRGRGRGR
        GRGRGRGRGR
Subjt:  GRGRGRGRGR

AT4G02840.1 Small nuclear ribonucleoprotein family protein

1.4e-51

92.73

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Query:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRG
        RFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRG
Subjt:  RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRG

Query:  RGRGRGRGRG
        RGRGRGRGRG
Subjt:  RGRGRGRGRG

AT4G02840.2 Small nuclear ribonucleoprotein family protein

3.8e-49

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Query:  RFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA
        RFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Subjt:  RFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA

Query:  GR-PLGRGRGRGRGRGRGRG
        G+ P GRGRGRGRGRGRGRG
Subjt:  GR-PLGRGRGRGRGRGRGRG

Sequences

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CDS sequence

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mRNA sequence

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AGGTTTTTGATGAAGCTCAACAATGAGACCGTCTCAATCGAACTCAAAAATGGAACTGTTGTCCATGGCACTATCACAGGTGTGGATATTAGCATGAATACACATTTGAA
GGCTGTGAAGCTTACTCTGAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGA
CTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCGGGAAGGCCTTTGGGACGTGGGCGGGGACGTGGCCGTGGTCGTGGTCGTGGGCGTGGACGC
TAGATTTGTTGCAGTTGTTCCAATTTTTGTGTCCCGTAGTGTAAACACTTGTATTGTAGGGAAAGTTTATGAATTTAGTGACGTGGAGAAGTGGTATAGCAATTCCCTGT
CCAATCTCATCATTTTTACAATGCTATCTAGTTTTTTTTCCTCCGCTATTAGTGATTTACTCTAATATCATCACAGTGATCAAACTCAGCCATGTGTTTAGATTGTTATC
TCATTTTTTTACTTTCAACTCCGAAAGATGTTATCATGCAGTGGTTGAGTTGGTTACGATGAATATCAACTTGTTTCATATGCTTGCCATCGACAAAATATTAGTAAGAC
TCTAAACACTAAGCTTCAGCTTTGGTCCTGCCCGTTCTTGAAGTTCCCCTCGAAGTTGGTTCAGGTGCAAGGAAATAATGGAAAGTACAAATAATAGGAGAAGCTTAACT
ATGTGAACACTCTGCTCCATATTCAATTGAAAGAG

Protein sequence

Show/hide protein sequence

RFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

MC06g2256 (gene) of Bitter gourd (Dali-11) v1 genome