CuGenDBv2

Gene ID	MC07g0005
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	MC07:79483..86244
RNA-Seq Expression	MC07g0005
Synteny	MC07g0005
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

6.49e-168

90.88

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVE ASKP EEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD+TMSD  DE++V+       NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]

9.22e-190

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

9.38e-181

95.44

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV+NTTKDTDD+TMSDG DE+NVSKD KEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

3.82e-180

95.09

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV+NTTKDTDD+T+SDG DE+NVSKD KEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

2.11e-177

94.39

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVK FVPGEVENASKP EEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNTV NTTK+TDD+TMSD  DE+NVSKDVKEQ NDE  PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

7.05e-165

89.82

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFV GEVE ASKP EEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD+T S   DE++V+       NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

4.46e-190

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

4.54e-181

95.44

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV+NTTKDTDD+TMSDG DE+NVSKD KEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

1.85e-180

95.09

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV+NTTKDTDD+T+SDG DE+NVSKD KEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

E5GB46 U2 small nuclear ribonucleoprotein a

7.05e-165

89.82

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFV GEVE ASKP EEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD+T S   DE++V+       NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

1.7e-53

48.86

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKN--ESVKTFVPGEVENASKPAEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK+     KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKN--ESVKTFVPGEVENASKPAEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDG
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P            +  ++ +++T+++G
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDG

P43333 U2 small nuclear ribonucleoprotein A'

2.9e-98

80.75

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA SLFSSKE EEE K  S +     EV+  S+ AE  +T  V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

1.3e-53

50.19

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKN--ESVKTFVPGEVENASKPAEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK+     KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKN--ESVKTFVPGEVENASKPAEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVSN
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P               +ED+TV+N
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVSN

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

1.7e-53

48.86

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKN--ESVKTFVPGEVENASKPAEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK+     KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKN--ESVKTFVPGEVENASKPAEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDG
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P            +  ++ +++T+++G
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDG

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

9.8e-46

45.38

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LP L TL LTNN +
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEE--EAKNESVKTFVPGEVENASKPAEEKQTSN
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  A+ +F  K  ++  +A  +SV T  P E+E       E  +  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEE--EAKNESVKTFVPGEVENASKPAEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G04210.1 Leucine-rich repeat protein kinase family protein

7.3e-04

38.37

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Query:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY
        +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  +D L  +P+LQ L+L  N   K P+Y
Subjt:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY

AT1G09760.1 U2 small nuclear ribonucleoprotein A

2.1e-99

80.75

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA SLFSSKE EEE K  S +     EV+  S+ AE  +T  V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

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CDS sequence

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ATGGTGAGACTCACGGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATAGAAAACCT
CGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGTTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTTATCAATAATA
ATAGGATCACTCGCATCAATCCAAATATTGGAGAATTCTTGCCAAAATTACACACATTAGTTCTTACAAACAACAGACTTGTGAACTTGGTAGAAATTGACCCGTTGGCA
TCCCTTCCAAAACTTCAGTTTCTTAGTTTATTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCCAGGAGTTTATTTTCATCAAAAGAAGTAGAAGAAGAGGCAAAAAACGAATCTGTGAAGACGTTTGTTCCTGGTGAGG
TAGAGAATGCATCAAAACCTGCAGAGGAGAAACAAACTTCAAATGTGTCCGCTCCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCTCAAACTCTT
GAAGAGGTTGCAAGATTAGAACAGGCGCTGAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACAGTGTCAAATACCACAAAAGATACGGATGATGA
GACAATGTCTGATGGTAGAGACGAAGACAATGTGTCCAAGGATGTAAAAGAACAGCCGAATGATGAATCGGCACCTATGGAGCAGTAG

mRNA sequence

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TTCCGATCGCCCTACCTCATCTTCTTCTCACTACAAGATTTCTTCCTTAATAGACATCTTCAATGATTAAGTGCATAAATTATATCACATTATGATTTGAAAAACAGCAA
CTTCCAACTTCCAAGTCTAGTAGTACAATTTAAGTTTGGTTTTTAAACGTTCCTGGGAAGAATAATGTTGCAAAGACATCTCAAACTACTGCTCCTACAACACAAAGTCC
AGTTGCATGAATTTCGGTCATCCTTGTGATTGCTAATGCTATCACTTAGCATTCTATAACCTTGTTGCTGAACATGACACATGTAATAACAAGTACAATAATACCTATAG
CCCACTGCAACATGCTGTCGAGGGAATAAAATCCGCCATCGAATCCATCAGGGTCGTGAACGACGGCTGTAGCGGCGGTGGAATCTTCCTGGGGCCTGTTCTCGACAAGG
AGATCGCCCTCTTCTTTTGCAGAAGACCAAATTAAACCTCCCAAAGAAGACTTGTTTGTGTTTGCCGTATCTTCTGCAATCACCAACGTCAGAGAGAGCCAGAAACAGAG
CCCAGCTACTAGGCACCGCCCCATGTATTTTCTCTTCTGGACTTCAAGATTGAAAAGATCGGTCGCCAGTTTAATTTCCATCCTTGGATGCAATTAGTTCGAAATCTCAG
CTAAAACGCAAAAGAAATTAGAAGCGAAAACAAGCAGAGCAGGGAATGCAATTTCGAAGACGACGACCAACAAGTAAACGAGACGAGAGTGAACCAGAAAATTCCCATAC
ATGCGCCACTTCCATGTAATTCGTTACACGTCATCTCGTTTAATCCACATCGTAGATCACGGATCTGACGGTCGAAAAAAAAAGACAGAGTCAGGGATTGGGTAAACCCA
TCGATATCGATAAGGGACCCAAATGTCAATTATATGGGCCGTTGGAAAGTCCATTAAGGGGTTGGGTCAGCCTGGAATTTCGACGTTGTCCTCTCTTCCCTCGCTCGAAG
TGACGCAGGGTTGCGTTGCTGTCGGTTGTCGGCGACGCGTTCCCTTCGTTCTAAAGCCCTAAACCCGTCGTCGTCGTTGGTGCCCGGTAACTAAAGCCAGAAGAACATGG
TGAGACTCACGGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATAGAAAACCTCGGT
GCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGTTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTTATCAATAATAATAG
GATCACTCGCATCAATCCAAATATTGGAGAATTCTTGCCAAAATTACACACATTAGTTCTTACAAACAACAGACTTGTGAACTTGGTAGAAATTGACCCGTTGGCATCCC
TTCCAAAACTTCAGTTTCTTAGTTTATTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTTCAAG
AAAGTCAGAAACAAGGAGAGATTGGAGGCCAGGAGTTTATTTTCATCAAAAGAAGTAGAAGAAGAGGCAAAAAACGAATCTGTGAAGACGTTTGTTCCTGGTGAGGTAGA
GAATGCATCAAAACCTGCAGAGGAGAAACAAACTTCAAATGTGTCCGCTCCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCTCAAACTCTTGAAG
AGGTTGCAAGATTAGAACAGGCGCTGAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACAGTGTCAAATACCACAAAAGATACGGATGATGAGACA
ATGTCTGATGGTAGAGACGAAGACAATGTGTCCAAGGATGTAAAAGAACAGCCGAATGATGAATCGGCACCTATGGAGCAGTAGTAGAAGGTTGTTGCTCTTACTGCTCG
GTGGCTCGTCTAGTAGCATTCATCGATGGTGATCCTGTCATGCTGATTTATGTATTAAACCTTTTTAGAAGTATAAGCTGACACTTCCCAGCCTGGGGATGTTGGACGTC
TCCTTTCCCTCTCTTTTAATTAGATGGTTCTTCCCCCCCCCCCACTGTCGTTTCTTTTCCTTTTTTGAGCAAGGAATTCTTTTAAAATATGTAAGATTCTATTGGCATTG
TTATCAGGAACTGAAATGGTTTATGTTGTATGTACGACACTTATGATGGCTTTGAAATTTTCTTTTCCTGCCGTGAAGAGTTGTTGCGTCCCC

Protein sequence

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MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLA
SLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFVPGEVENASKPAEEKQTSNVSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLLEDNTVSNTTKDTDDETMSDGRDEDNVSKDVKEQPNDESAPMEQ

MC07g0005 (gene) of Bitter gourd (Dali-11) v1 genome