CuGenDBv2

Gene ID	MC07g0056
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription factor, MADS-box
Genome location	MC07:733753..733933
RNA-Seq Expression	MC07g0056
Synteny	MC07g0056
Gene Ontology terms	GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR002100 - Transcription factor, MADS-box IPR036879 - Transcription factor, MADS-box superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576135.1 Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia]

2.31e-16

72.92

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIED CNR+VTFCKRR+G+IKKAR+L VLCDVE+ LV+FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]

7.45e-17

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIED CNR+VTFCKRRSG+IKKAR+L VLCDVE+ LVVFTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.19e-16

72.92

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIED CNR+VTFCKRR+G+IKKAR+L VLCDVE+ LV+FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

XP_022155416.1 MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]

6.01e-16

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

XP_022155417.1 MADS-box transcription factor 8-like isoform X3 [Momordica charantia]

2.86e-16

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X1

2.95e-16

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X3

1.38e-16

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X2

2.91e-16

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIEDSCNR+VTFCKRRSG+IKKAR+L VLCDVEL L++FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like

4.25e-16

77.08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIED CNR+VTFCKRRSG+IKKAR+L VLCDVE+ LVVFTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

A0A6J1KPU7 MADS-box protein 04g005320-like

5.75e-16

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIED CNR+VTFCKRRSG+IKKAR+L VLCDVE+ LV+FTNRG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

SwissProt top hits

e value

%identity

Alignment

A0A217EJJ0 Agamous-like MADS-box protein AGL11

1.7e-08

58.33

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ L+VF++RG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

F6I457 Agamous-like MADS-box protein AGL11

1.7e-08

58.33

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG
        + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ L+VF++RG
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRG

Q2V0P1 MADS-box transcription factor 58

7.7e-09

55.93

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Query:  GGENGTELDRCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        G E      + E  RIE++ NR VTFCKRRSG++KKA +L VLCD E+ LVVF++RG L
Subjt:  GGENGTELDRCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

Q38836 Agamous-like MADS-box protein AGL11

1.3e-08

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

Q40168 Floral homeotic protein AGAMOUS

4.5e-09

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ LVVF+NRG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

Arabidopsis top hits

e value

%identity

Alignment

AT4G09960.1 K-box region and MADS-box transcription factor family protein

9.3e-10

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

AT4G09960.2 K-box region and MADS-box transcription factor family protein

9.3e-10

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

AT4G09960.3 K-box region and MADS-box transcription factor family protein

9.3e-10

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

AT4G09960.4 K-box region and MADS-box transcription factor family protein

9.3e-10

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE+S NR VTFCKRR+G++KKA +L VLCD E+ L+VF+ RG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

AT4G18960.1 K-box region and MADS-box transcription factor family protein

1.6e-09

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Query:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL
        + E  RIE++ NR VTFCKRR+G++KKA +L VLCD E+ L+VF++RG L
Subjt:  RCEENRIEDSCNRYVTFCKRRSGIIKKARDL-VLCDVELRLVVFTNRGVL

Sequences

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CDS sequence

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GACTGCGGAGGAGAAAATGGGACGGAACTAGATCGATGTGAAGAGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACCTTCTGCAAGAGAAGATCTGGAATCATCAA
GAAGGCTCGCGATCTCGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTATTG

mRNA sequence

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GACTGCGGAGGAGAAAATGGGACGGAACTAGATCGATGTGAAGAGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACCTTCTGCAAGAGAAGATCTGGAATCATCAA
GAAGGCTCGCGATCTCGTTCTCTGCGACGTTGAGCTCAGACTCGTCGTCTTCACCAACCGAGGAGTATTG

Protein sequence

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DCGGENGTELDRCEENRIEDSCNRYVTFCKRRSGIIKKARDLVLCDVELRLVVFTNRGVL

MC07g0056 (gene) of Bitter gourd (Dali-11) v1 genome