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MC07g0090 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC07g0090
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTranscription factor, MADS-box
Genome locationMC07:1636487..1636633
RNA-Seq ExpressionMC07g0090
SyntenyMC07g0090
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5751047.1 hypothetical protein HS088_TW02G00057 [Tripterygium wilfordii]5.94e-1057.45Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY
        RQ    +RR+ L+KKAC+L +LCD  + L+IF+NRG+LYEF SG+RY
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY

KAG6576135.1 Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia]2.57e-1060.42Show/hide
Query:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR
        C R     +RR+ L+KKA +L +LCD  +GLVIF NRGRLYEF SGNR
Subjt:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR

KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]6.85e-1058.33Show/hide
Query:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR
        C R     +RRS L+KKA +L +LCD  +GLV+F NRGRLYEF SG+R
Subjt:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.45e-1060.42Show/hide
Query:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR
        C R     +RR+ L+KKA +L +LCD  +GLVIF NRGRLYEF SGNR
Subjt:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR

XP_023514717.1 MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]1.11e-0859.57Show/hide
Query:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        C R     +RR+ L+KKA +L +LCD  +GLVIF NRGRLYEF SGN
Subjt:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

TrEMBL top hitse value%identityAlignment
A0A2I0IFZ9 MADS-box domain-containing protein9.46e-0956.52Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR
        RQ    +RRS L+KKA +L +LCD  + L++F++RGRLYEF SGNR
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR

A0A438JDD9 MADS-box protein J26.37e-0957.45Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY
        RQ    +RRS ++KKA +L +LCD  L L+IF+ RGRLYEF SGNR+
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY

A0A6J1KPU7 MADS-box protein 04g005320-like1.03e-0859.57Show/hide
Query:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        C R     +RRS L+KKA +L +LCD  +GLVIF NRGRLYEF SG+
Subjt:  CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

A0A7J7DXK3 MADS-box domain-containing protein2.88e-1057.45Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY
        RQ    +RR+ L+KKAC+L +LCD  + L+IF+NRG+LYEF SG+RY
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY

F6H467 MADS-box domain-containing protein6.75e-0958.7Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR
        RQ    +RRS ++KKA +L +LCD  L L+IF+ RGRLYEF SGNR
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNR

SwissProt top hitse value%identityAlignment
Q03489 Agamous-like MADS-box protein AGL9 homolog1.4e-0551.11Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF S +
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

Q38694 Agamous-like MADS-box protein AGL9 homolog5.0e-0655.81Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYS
        RQ    +RR RL+KKA +L +LCD  + L+IF+NRG+LYEF S
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYS

Q6Z6W2 MADS-box transcription factor 576.5e-0653.33Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  +GLV+F++ GRLYEF S N
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

Q9FIS1 MADS-box protein AGL428.5e-0653.33Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

Q9SAR1 MADS-box transcription factor 85.0e-0654.55Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSG
        RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF SG
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSG

Arabidopsis top hitse value%identityAlignment
AT3G58780.2 K-box region and MADS-box transcription factor family protein6.0e-0755.32Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY
        RQ    +RR+ L+KKA +L +LCD  + LVIF+ RGRLYE Y+ NRY
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY

AT5G62165.1 AGAMOUS-like 426.0e-0753.33Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

AT5G62165.2 AGAMOUS-like 426.0e-0753.33Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

AT5G62165.3 AGAMOUS-like 426.0e-0753.33Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN

AT5G62165.4 AGAMOUS-like 426.0e-0753.33Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF S +
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCGAGCGACAATTCGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTTGCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCG
TGGTCGCCTCTACGAGTTTTACAGTGGAAATAGGTAC
mRNA sequenceShow/hide mRNA sequence
TGCGAGCGACAATTCGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTTGCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCG
TGGTCGCCTCTACGAGTTTTACAGTGGAAATAGGTAC
Protein sequenceShow/hide protein sequence
CERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEFYSGNRY