CuGenDBv2

Gene ID	MC07g0107
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RRM domain-containing protein
Genome location	MC07:2079431..2080809
RNA-Seq Expression	MC07g0107
Synteny	MC07g0107
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

4.96e-53

72.73

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIA+FPFM+SGMPRPVRARPAEVEMFDDRP+KPG KISF WL+ +DPDF+VA+++K  ++KH AE AFL      +EEKLAKQQQE LKGNYKK+EIV+S
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VM DGTARRLAK Y+MR+ DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

9.98e-53

72.73

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIA+FPFM+SGMPRPVRARPAE EMFDDRP+KPG KISF WL+ +DPDF+VA+++K  T+KH AE AFL      +EEKLAKQQQE L+GNYKK+EIV+S
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VM DGTARRLAK Y+MRV DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

XP_022150340.1 uncharacterized protein LOC111018537 [Momordica charantia]

8.02e-71

94.21

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL      +EEKLAKQQQEVLKGNYKKHEIVES
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VMTDGTARRLAKCYDMRVFDD
Subjt:  VMTDGTARRLAKCYDMRVFDD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

2.01e-52

74.38

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE AFL      +EEKLAKQQQ+ LK NYKK+EIVE 
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VMTDGTARRLA+ Y+MRV DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

9.67e-58

79.34

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIA+FPFM+SGMPRPVRARPAEVEMFDDRP+KPG KISF+WL+++DPDF+VAKKMKL TRKH AE AFL      +EEKLAKQQQE LKGNYKK+EIVES
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VM DGTARRLAK Y+MRV DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

2.40e-53

72.73

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIA+FPFM+SGMPRPVRARPAEVEMFDDRP+KPG KISF WL+ +DPDF+VA+++K  ++KH AE AFL      +EEKLAKQQQE LKGNYKK+EIV+S
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VM DGTARRLAK Y+MR+ DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

A0A1S3B3J3 uncharacterized protein LOC103485592

4.83e-53

72.73

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIA+FPFM+SGMPRPVRARPAE EMFDDRP+KPG KISF WL+ +DPDF+VA+++K  T+KH AE AFL      +EEKLAKQQQE L+GNYKK+EIV+S
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VM DGTARRLAK Y+MRV DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

A0A6J1DB90 uncharacterized protein LOC111018537

3.88e-71

94.21

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL      +EEKLAKQQQEVLKGNYKKHEIVES
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VMTDGTARRLAKCYDMRVFDD
Subjt:  VMTDGTARRLAKCYDMRVFDD

A0A6J1H6P8 uncharacterized protein LOC111460615

2.78e-52

73.55

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        +IA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE AFL      +EEKLAKQQQ+ LK NYKK+EIVE 
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VMTDGTARRLA+ Y+MRV DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

1.38e-52

73.55

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Query:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES
        VI++FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL + DPDF+VAKKMK  T++H AE AFL      +EEKLAKQQQ+ LKGNYKK+EI+E 
Subjt:  VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVES

Query:  VMTDGTARRLAKCYDMRVFDD
        VMTDGTARRLA+ Y+MRV DD
Subjt:  VMTDGTARRLAKCYDMRVFDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.0e-25

45.69

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Query:  IAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL----QEEKLAKQQQEVLKGNYKKHEIVESVMT
        +++ PFM++GMPRPVRA  AE  MF D+P KPG  + F W+  NDPDF  A+++K   RKH+AE +F+    + EKL+KQQ E    ++KK E+++ ++ 
Subjt:  IAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL----QEEKLAKQQQEVLKGNYKKHEIVESVMT

Query:  DGTARRLAKCYDMRVF
        DG A++LA  YD++ F
Subjt:  DGTARRLAKCYDMRVF

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

5.2e-25

44.92

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Query:  IAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVESV
        +++ PFM++GMPRPVRA  AE  MF D+P KPG  + F W+  NDPDF  A+++K   RKH+AE +F+      + EKL+KQQ E    ++KK E+++ +
Subjt:  IAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFL------QEEKLAKQQQEVLKGNYKKHEIVESV

Query:  MTDGTARRLAKCYDMRVF
        + DG A++LA  YD++ F
Subjt:  MTDGTARRLAKCYDMRVF

Sequences

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CDS sequence

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GTGATAGCCGAGTTCCCGTTCATGATTTCTGGAATGCCAAGACCGGTGAGGGCACGCCCTGCAGAAGTGGAAATGTTTGATGATCGCCCGATAAAGCCTGGTAGCAAGAT
TAGCTTTTCCTGGCTGGATCAGAATGATCCTGATTTTCAAGTTGCAAAGAAAATGAAGCTTTTTACAAGGAAACACGCCGCGGAAACTGCATTCTTGCAAGAGGAGAAGC
TGGCAAAGCAGCAACAAGAAGTACTGAAAGGAAACTACAAGAAACATGAGATTGTAGAAAGTGTGATGACTGATGGAACTGCTCGCAGGTTAGCAAAATGTTATGATATG
AGAGTTTTTGATGAT

mRNA sequence

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Protein sequence

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VIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETAFLQEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDM
RVFDD

MC07g0107 (gene) of Bitter gourd (Dali-11) v1 genome