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MC07g0161 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC07g0161
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionrRNA N-glycosidase
Genome locationMC07:3166492..3166689
RNA-Seq ExpressionMC07g0161
SyntenyMC07g0161
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0035821 - modification of morphology or physiology of other organism (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
GO:0090729 - toxin activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
1BRY_Y Bryodin Type I Rip [Bryonia dioica]8.70e-1662.69Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        VYN+ LL  +I G   YTL+HL N  D+TI++AVDV NVY+MGY  G VSYFFNE +A EA+KFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

AAT91090.1 trichosanthin precursor, partial [Trichosanthes kirilowii]1.27e-1455.22Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        +Y++ LL  T++G   Y L+HL N  D+TI++A+DV NVY+MGYR G  SYFFNE +A EA+K+VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

KAG6592903.1 hypothetical protein SDJN03_12379, partial [Cucurbita argyrosperma subsp. sororia]2.70e-1662.69Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEY-AAEASKFVFK
        +Y++ LL   + G   YTLVHL N  DQTI++A+DV NVY+MGYR G+VSYFFNE  AAEA+KFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEY-AAEASKFVFK

P33185.3 RecName: Full=Ribosome-inactivating protein bryodin I; AltName: Full=BD1; AltName: Full=rRNA N-glycosidase; Flags: Precursor [Bryonia dioica]1.51e-1562.69Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        VYN+ LL  +I G   YTL+HL N  D+TI++AVDV NVY+MGY  G VSYFFNE +A EA+KFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

XP_022156718.1 ribosome-inactivating protein alpha-trichosanthin-like [Momordica charantia]4.22e-2883.58Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNE-YAAEASKFVFK
        VYN+RLL LT+ GPS YTLVHL+N DDQTITLAVDV+NVY+MGYRNGHVSYFFNE  AAEASKFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNE-YAAEASKFVFK

TrEMBL top hitse value%identityAlignment
A0A6J1DRD7 rRNA N-glycosidase2.04e-2883.58Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNE-YAAEASKFVFK
        VYN+RLL LT+ GPS YTLVHL+N DDQTITLAVDV+NVY+MGYRNGHVSYFFNE  AAEASKFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNE-YAAEASKFVFK

Q53X19 rRNA N-glycosidase7.32e-1662.69Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        VYN+ LL  +I G   YTL+HL N  D+TI++AVDV NVY+MGY  G VSYFFNE +A EA+KFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

Q6BBQ4 rRNA N-glycosidase (Fragment)6.15e-1555.22Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        +Y++ LL  T++G   Y L+HL N  D+TI++A+DV NVY+MGYR G  SYFFNE +A EA+K+VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

Q84SV8 rRNA N-glycosidase2.77e-1455.22Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        +Y++ LL  T+ G   Y L+HL N  D+TI++A+DV NVY+MGYR G  SYFFNE +A EA+K+VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

Q9LRE3 rRNA N-glycosidase (Fragment)1.20e-1456.72Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        +Y++ LL  T+ G   Y L+HL N  D+TI++A+DV NVYVMGYR G  SYFFNE +A EA+K+VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

SwissProt top hitse value%identityAlignment
P09989 Ribosome-inactivating protein alpha-trichosanthin5.7e-1353.73Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        +Y++ LL  ++ G   Y L+HL N  D+TI++A+DV NVY+MGYR G  SYFFNE +A EA+K+VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

P16094 Ribosome-inactivating protein momordin I2.8e-1256.72Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAAE-ASKFVFK
        VYN+ LL  ++ G   Y L+HL N D +TIT+AVDV NVY+MGY     SYFFNE AAE AS++VF+
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAAE-ASKFVFK

P24478 Ribosome-inactivating protein karasurin-C1.5e-1356.72Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        +Y++ LL  T+ G   Y L+HL N  D+TI++A+DV NVYVMGYR G  SYFFNE +A EA+K+VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

P33185 Ribosome-inactivating protein bryodin I1.0e-1462.69Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK
        VYN+ LL  +I G   YTL+HL N  D+TI++AVDV NVY+MGY  G VSYFFNE +A EA+KFVFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAA-EASKFVFK

Q00465 Ribosome-inactivating protein luffin-alpha6.9e-1155.22Show/hide
Query:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAAE-ASKFVFK
        VYN+ LL  +  G S YTL+ L N D + IT+AVDV NVY+MGY     SYFFNE  A+ AS++VFK
Subjt:  VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAAE-ASKFVFK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTACAATATGAGGTTATTGCCTCTCACCATTCGAGGTCCAAGTGGTTACACATTAGTCCATCTTCACAATGATGATGATCAAACCATCACGTTGGCAGTAGATGTAGT
AAACGTTTATGTTATGGGGTATCGCAACGGTCATGTATCCTACTTTTTCAATGAATATGCTGCCGAAGCTTCCAAATTTGTATTCAAA
mRNA sequenceShow/hide mRNA sequence
GTGTACAATATGAGGTTATTGCCTCTCACCATTCGAGGTCCAAGTGGTTACACATTAGTCCATCTTCACAATGATGATGATCAAACCATCACGTTGGCAGTAGATGTAGT
AAACGTTTATGTTATGGGGTATCGCAACGGTCATGTATCCTACTTTTTCAATGAATATGCTGCCGAAGCTTCCAAATTTGTATTCAAA
Protein sequenceShow/hide protein sequence
VYNMRLLPLTIRGPSGYTLVHLHNDDDQTITLAVDVVNVYVMGYRNGHVSYFFNEYAAEASKFVFK