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MC07g0165 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC07g0165
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionrRNA N-glycosidase
Genome locationMC07:3265629..3266170
RNA-Seq ExpressionMC07g0165
SyntenyMC07g0165
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0044419 - interspecies interaction between organisms (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR016139 - Ribosome-inactivating protein, subdomain 2
IPR017989 - Ribosome-inactivating protein type 1/2
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
1MRJ_A STUDIES ON CRYSTAL STRUCTURES ACTIVE CENTER GEOMETRY AND DEPURINE MECHANISM OF TWO RIBOSOME-INACTIVATING PROTEINS [Trichosanthes kirilowii]5.79e-4150.28Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G  SYFFNE++A+     +YV    MR+VTL +S +Y  L+  A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

2JDL_A Structure of C-terminal region of acidic P2 ribosomal protein complexed with trichosanthin [Trichosanthes kirilowii]5.79e-4150.28Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G  SYFFNE++A+     +YV    MR+VTL +S +Y  L+  A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

AAB22585.1 trichosanthin, TCS=single-chain ribosome-inactivating protein [Trichosanthes kirilowii, Peptide, 247 aa] [Trichosanthes kirilowii]5.79e-4150.28Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G  SYFFNE++A+     +YV    MR+VTL +S +Y  L+  A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

AAS92579.1 trichomislin, partial [Trichosanthes kirilowii]3.79e-4150.28Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G +SYFFNE++A+     +YV     R+VTL +S +Y  L+I A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

XP_022156718.1 ribosome-inactivating protein alpha-trichosanthin-like [Momordica charantia]1.26e-6464.52Show/hide
Query:  TARKNIVNVYIMRYRNGHVSYFFNESAAS--FHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYD--PPSHCAVAFFVLIQS
        T   +++NVYIM YRNGHVSYFFNE AA+       +   RRVTL F+S+YA L+  A K+R   PLGLPAMNNAITNLVYYD  P +  A AF VLIQS
Subjt:  TARKNIVNVYIMRYRNGHVSYFFNESAAS--FHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYD--PPSHCAVAFFVLIQS

Query:  TPEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLNY
        T EA RF+ I+KVIG  V+KD  PSEALLSLENNWGAL KQIQIAE N+G+FKDPVL ++    KVQ+N V SN+VTANI LLLNY
Subjt:  TPEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLNY

TrEMBL top hitse value%identityAlignment
A0A6J1DRD7 rRNA N-glycosidase6.12e-6564.52Show/hide
Query:  TARKNIVNVYIMRYRNGHVSYFFNESAAS--FHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYD--PPSHCAVAFFVLIQS
        T   +++NVYIM YRNGHVSYFFNE AA+       +   RRVTL F+S+YA L+  A K+R   PLGLPAMNNAITNLVYYD  P +  A AF VLIQS
Subjt:  TARKNIVNVYIMRYRNGHVSYFFNESAAS--FHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYD--PPSHCAVAFFVLIQS

Query:  TPEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLNY
        T EA RF+ I+KVIG  V+KD  PSEALLSLENNWGAL KQIQIAE N+G+FKDPVL ++    KVQ+N V SN+VTANI LLLNY
Subjt:  TPEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLNY

Q6PRG5 rRNA N-glycosidase (Fragment)1.83e-4150.28Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G +SYFFNE++A+     +YV     R+VTL +S +Y  L+I A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

Q84SV8 rRNA N-glycosidase8.40e-4150.28Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G  SYFFNE++A+     +YV    MR+VTL +S +Y  L+  A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

Q8LPV7 rRNA N-glycosidase (Fragment)7.30e-4149.72Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G +SYFFNE++A+     +YV     R+VTL +S +Y  L+I A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI  LLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

Q94KE4 rRNA N-glycosidase1.19e-4049.72Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVYIM YR G  SYFFNE++A+     +YV    MR++TL +S +Y  L+  A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYV----MRRVTLLFSSDYACLKIVASKLRM-YPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

SwissProt top hitse value%identityAlignment
P09989 Ribosome-inactivating protein alpha-trichosanthin1.8e-3449.72Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAA--SFHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEATR
        ++ NVYIM YR G  SYFFNE++A  +     +  MR+VTL +S +Y  L+  A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA R
Subjt:  NIVNVYIMRYRNGHVSYFFNESAA--SFHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEATR

Query:  FKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
        +K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  FKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

P16094 Ribosome-inactivating protein momordin I8.6e-3245.41Show/hide
Query:  TARKNIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQS
        T   ++ NVYIM Y     SYFFNE AA   +  QYV     R++TL +S +Y  L+I A K R   P+GLPA+++AI+ L++YD  +  A A  VLIQ+
Subjt:  TARKNIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQS

Query:  TPEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVL----PSNKVQVNKVRSNIVTANIPLLLN
        T EA RFK I++ I     +D  PS A +SLEN+W  L KQIQ+A+ N+G F+ P++      N+VQ+  V S +VT+NI LLLN
Subjt:  TPEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVL----PSNKVQVNKVRSNIVTANIPLLLN

P24478 Ribosome-inactivating protein karasurin-C2.4e-3449.72Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA
        ++ NVY+M YR G  SYFFNE++A+     +YV     R+VTL +S +Y  L+I A K+R   PLGLPA+++AIT L YY+  S  A A  VLIQST EA
Subjt:  NIVNVYIMRYRNGHVSYFFNESAASFHICIQYVM----RRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEA

Query:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN
         R+K I++ IG  V K   PS A++SLEN+W AL KQIQIA  N+GQF+ PV+  N    +V +  V + +VT+NI LLLN
Subjt:  TRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSN----KVQVNKVRSNIVTANIPLLLN

P33185 Ribosome-inactivating protein bryodin I1.7e-3247.49Show/hide
Query:  NIVNVYIMRYRNGHVSYFFNESAA--SFHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEATR
        ++ NVYIM Y  G VSYFFNE++A  +     +   ++VTL +S +Y  L+  A K+R   PLGLPA+++AIT L YY   S  A A  VLIQST E+ R
Subjt:  NIVNVYIMRYRNGHVSYFFNESAA--SFHICIQYVMRRVTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEATR

Query:  FKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVL----PSNKVQVNKVRSNIVTANIPLLLN
        +K I++ IG  V K   PS A +SLENNW AL KQIQIA  N+GQF+ PV+     + +V +    + +VT+NI LLLN
Subjt:  FKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVL----PSNKVQVNKVRSNIVTANIPLLLN

Q00465 Ribosome-inactivating protein luffin-alpha1.3e-3246.49Show/hide
Query:  TARKNIVNVYIMRYRNGHVSYFFNESAASFHICIQYVMRR---VTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQST
        T   ++ NVYIM Y     SYFFNES A   +  QYV +    VTL +S +Y  L+  A K+R   PLG PA+++AIT L +YD  +  A AF V+IQ+T
Subjt:  TARKNIVNVYIMRYRNGHVSYFFNESAASFHICIQYVMRR---VTLLFSSDYACLKIVASKLR-MYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQST

Query:  PEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVL----PSNKVQVNKVRSNIVTANIPLLLNY
         EA+RFK I+  I   + K+  PS A +SLEN W AL KQIQ+A+ N+G FK PV+       +V++  V S +VT NI LLLNY
Subjt:  PEATRFKCIKKVIGNVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVL----PSNKVQVNKVRSNIVTANIPLLLNY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAGCAAGGAAGAATATAGTAAACGTTTATATTATGAGGTATCGCAATGGTCATGTATCCTACTTTTTCAATGAGTCTGCTGCAAGCTTCCATATTTGTATTCAATATGT
TATGCGGAGAGTTACACTTCTATTTTCTAGCGACTATGCATGTCTCAAAATTGTTGCAAGCAAATTGAGAATGTATCCCCTTGGACTCCCAGCTATGAACAATGCCATTA
CCAACTTGGTTTACTATGACCCCCCCTCACACTGTGCTGTTGCATTTTTTGTACTCATTCAAAGTACTCCTGAGGCTACGAGATTTAAATGTATCAAGAAAGTAATTGGC
AATGTTGTTAAGAAAGACTCCCCACCAAGTGAAGCACTTTTAAGTTTAGAAAATAATTGGGGTGCTCTCTTGAAACAAATTCAGATAGCGGAGAATAATGATGGACAGTT
TAAAGATCCTGTTTTGCCCAGTAACAAGGTTCAAGTAAACAAAGTCAGATCAAACATCGTAACCGCCAACATCCCCTTACTGCTAAATTAC
mRNA sequenceShow/hide mRNA sequence
ACAGCAAGGAAGAATATAGTAAACGTTTATATTATGAGGTATCGCAATGGTCATGTATCCTACTTTTTCAATGAGTCTGCTGCAAGCTTCCATATTTGTATTCAATATGT
TATGCGGAGAGTTACACTTCTATTTTCTAGCGACTATGCATGTCTCAAAATTGTTGCAAGCAAATTGAGAATGTATCCCCTTGGACTCCCAGCTATGAACAATGCCATTA
CCAACTTGGTTTACTATGACCCCCCCTCACACTGTGCTGTTGCATTTTTTGTACTCATTCAAAGTACTCCTGAGGCTACGAGATTTAAATGTATCAAGAAAGTAATTGGC
AATGTTGTTAAGAAAGACTCCCCACCAAGTGAAGCACTTTTAAGTTTAGAAAATAATTGGGGTGCTCTCTTGAAACAAATTCAGATAGCGGAGAATAATGATGGACAGTT
TAAAGATCCTGTTTTGCCCAGTAACAAGGTTCAAGTAAACAAAGTCAGATCAAACATCGTAACCGCCAACATCCCCTTACTGCTAAATTAC
Protein sequenceShow/hide protein sequence
TARKNIVNVYIMRYRNGHVSYFFNESAASFHICIQYVMRRVTLLFSSDYACLKIVASKLRMYPLGLPAMNNAITNLVYYDPPSHCAVAFFVLIQSTPEATRFKCIKKVIG
NVVKKDSPPSEALLSLENNWGALLKQIQIAENNDGQFKDPVLPSNKVQVNKVRSNIVTANIPLLLNY