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MC07g0192 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC07g0192
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionstructure-specific endonuclease subunit SLX1
Genome locationMC07:4639952..4640098
RNA-Seq ExpressionMC07g0192
SyntenyMC07g0192
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]2.23e-0866.67Show/hide
Query:  ISNP---KPSSSLTKDPSAATLSVESKLKPKL--WCVYLIISSKSPFETYVGVT
        ISNP   K SSS +KDP   TL V+S+ KPKL  WCVYLIISS SP +TYVGVT
Subjt:  ISNP---KPSSSLTKDPSAATLSVESKLKPKL--WCVYLIISSKSPFETYVGVT

XP_022152567.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]1.22e-1786Show/hide
Query:  ISNPKPSSSL-TKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        ISNPKPSSS  TKDPSAATLS ES+LKPK WCVYLIISS SPF+TYVGVT
Subjt:  ISNPKPSSSL-TKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]2.17e-0868.89Show/hide
Query:  KPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        K SSS TKDP    L V+S+ KPK WCVYLIISS SP +TYVGVT
Subjt:  KPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

XP_038903985.1 structure-specific endonuclease subunit slx1 isoform X2 [Benincasa hispida]1.14e-0868.89Show/hide
Query:  KPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        K SSS TKDP    L V+S+ KPK WCVYLIISS SP +TYVGVT
Subjt:  KPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

XP_038903986.1 structure-specific endonuclease subunit slx1 isoform X3 [Benincasa hispida]9.65e-0968.89Show/hide
Query:  KPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        K SSS TKDP    L V+S+ KPK WCVYLIISS SP +TYVGVT
Subjt:  KPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein1.08e-0866.67Show/hide
Query:  ISNP---KPSSSLTKDPSAATLSVESKLKPKL--WCVYLIISSKSPFETYVGVT
        ISNP   K SSS +KDP   TL V+S+ KPKL  WCVYLIISS SP +TYVGVT
Subjt:  ISNP---KPSSSLTKDPSAATLSVESKLKPKL--WCVYLIISSKSPFETYVGVT

A0A1S3CFH5 structure-specific endonuclease subunit slx14.44e-0763.04Show/hide
Query:  PKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        PK SSS TK P+      E K  PK WCVYLIISS SP +TYVGVT
Subjt:  PKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

A0A6J1DGL6 structure-specific endonuclease subunit SLX15.91e-1886Show/hide
Query:  ISNPKPSSSL-TKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        ISNPKPSSS  TKDPSAATLS ES+LKPK WCVYLIISS SPF+TYVGVT
Subjt:  ISNPKPSSSL-TKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

A0A6J1F1V2 structure-specific endonuclease subunit slx11.47e-0755.1Show/hide
Query:  ISNPKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        IS+P+ S S +      TL V+S+ +PK WCVYLIISS  P +TYVGVT
Subjt:  ISNPKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

A0A6J1J559 structure-specific endonuclease subunit slx1 isoform X27.61e-0751.02Show/hide
Query:  ISNPKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT
        IS+P+ S S +      TL+++S+ + K WCVYLIISS  P +TYVGVT
Subjt:  ISNPKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTCAAATCCAAAACCCTCTTCTTCTTTAACCAAGGATCCATCTGCTGCAACATTGAGCGTTGAATCGAAGCTGAAACCGAAGCTATGGTGTGTGTATCTCATCATCTC
CTCCAAATCCCCCTTTGAAACCTATGTTGGGGTCACC
mRNA sequenceShow/hide mRNA sequence
ATTTCAAATCCAAAACCCTCTTCTTCTTTAACCAAGGATCCATCTGCTGCAACATTGAGCGTTGAATCGAAGCTGAAACCGAAGCTATGGTGTGTGTATCTCATCATCTC
CTCCAAATCCCCCTTTGAAACCTATGTTGGGGTCACC
Protein sequenceShow/hide protein sequence
ISNPKPSSSLTKDPSAATLSVESKLKPKLWCVYLIISSKSPFETYVGVT