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MC07g0238 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC07g0238
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationMC07:6947614..6947760
RNA-Seq ExpressionMC07g0238
SyntenyMC07g0238
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR008686 - RNA-dependent RNA polymerase, mitoviral


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAB41747.1 TPA_inf: RNA-dependent RNA polymerase [Dahlia pinnata mitovirus 1]2.37e-1471.11Show/hide
Query:  FTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        FT+GQPLGF  SWP F LTHHM+VW+AA RVY T K  DYA+LGD
Subjt:  FTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

KAF3974216.1 hypothetical protein CMV_002445 [Castanea mollissima]3.03e-2695.92Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
        VTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD

KAG5568278.1 hypothetical protein H5410_064699 [Solanum commersonii]5.10e-2893.88Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
        VTFTKGQPLGF RSWPLFTL HHMLVWIA ERVYGTTKLCDYAILGDGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD

THG00166.1 hypothetical protein TEA_003359 [Camellia sinensis var. sinensis]9.61e-2795.92Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
        VTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD

YP_009315967.1 hypothetical protein [Cocos nucifera]7.13e-2791.84Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
        VTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLC YAI+GDGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD

TrEMBL top hitse value%identityAlignment
A0A2Z2C8R3 Uncharacterized protein3.45e-2791.84Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
        VTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLC YAI+GDGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD

A0A2Z6JKI7 RNA-dependent RNA polymerase1.15e-1471.11Show/hide
Query:  FTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        FT+GQPLGF  SWP F LTHHM+VW+AA RVY T K  DYA+LGD
Subjt:  FTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

A0A2Z6JVB3 RNA-dependent RNA polymerase1.15e-1471.11Show/hide
Query:  FTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        FT+GQPLGF  SWP F LTHHM+VW+AA RVY T K  DYA+LGD
Subjt:  FTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

A0A4S4DEK5 Uncharacterized protein4.65e-2795.92Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
        VTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD

A0A7T0KB43 Uncharacterized protein2.53e-1465.96Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        V+F  GQPLG+  SWPLF LTHH LVW  AE+VY  TKL  Y+ILGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

SwissProt top hitse value%identityAlignment
P92543 Uncharacterized mitochondrial protein AtMg011101.1e-0855.1Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD
        V F  GQPLG+  SW LF L+HH +VW+AA R Y   T    DYA+LGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD

P92567 Uncharacterized mitochondrial protein AtMg014101.1e-0851.06Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        V F  GQPLG+  SWP F L+HH+LVW  A++V+   +   YA+LGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

P93304 Uncharacterized mitochondrial protein AtMg004904.1e-0867.65Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY
        V+F  GQPLG+  SWPLF L+HHM+VW AAE VY
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY

Q33339 RNA-directed RNA polymerase3.2e-0544.68Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        +T+  GQP+G   S+ +  LTHH++V +AA     TT+  DY ILGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

Arabidopsis top hitse value%identityAlignment
AT2G07749.1 Mitovirus RNA-dependent RNA polymerase7.6e-1055.1Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD
        V F  GQPLG+  SW LF L+HH +VW+AA R Y   T    DYA+LGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD

ATMG00490.1 Mitovirus RNA-dependent RNA polymerase2.9e-0967.65Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY
        V+F  GQPLG+  SWPLF L+HHM+VW AAE VY
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY

ATMG01110.1 Mitovirus RNA-dependent RNA polymerase7.6e-1055.1Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD
        V F  GQPLG+  SW LF L+HH +VW+AA R Y   T    DYA+LGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD

ATMG01410.1 open reading frame 2047.6e-1051.06Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        V F  GQPLG+  SWP F L+HH+LVW  A++V+   +   YA+LGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGACGTTCACGAAGGGTCAACCCCTCGGATTTTGTCGTTCTTGGCCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGCTGAGAGGGTGTATGGCACGAC
GAAGCTTTGCGACTATGCCATTCTTGGCGACGGTGAT
mRNA sequenceShow/hide mRNA sequence
GTGACGTTCACGAAGGGTCAACCCCTCGGATTTTGTCGTTCTTGGCCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGCTGAGAGGGTGTATGGCACGAC
GAAGCTTTGCGACTATGCCATTCTTGGCGACGGTGAT
Protein sequenceShow/hide protein sequence
VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD