CuGenDBv2

Gene ID	MC07g0395
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LysM domain-containing protein
Genome location	MC07:11844607..11844849
RNA-Seq Expression	MC07g0395
Synteny	MC07g0395
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR018392 - LysM domain IPR036779 - LysM domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

EEF51460.1 conserved hypothetical protein [Ricinus communis]

2.15e-30

63.44

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Query:  SSCYCAIVVFAALMMFV------ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        +SCYCA+V+   +++        ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSCYCAIVVFAALMMFV------ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

OAY48227.1 hypothetical protein MANES_06G142100v8 [Manihot esculenta]

2.58e-28

61.96

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Query:  SSCYCAIVVFAALMMFV-----ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        +S +CA+V+   +++       ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSCYCAIVVFAALMMFV-----ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

XP_002510858.2 uncharacterized protein LOC8258314 [Ricinus communis]

2.79e-30

63.44

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Query:  SSCYCAIVVFAALMMFV------ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        +SCYCA+V+   +++        ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSCYCAIVVFAALMMFV------ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

XP_021649063.1 uncharacterized protein LOC110641587 [Hevea brasiliensis]

9.03e-29

63.74

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Query:  SCYCAIVVFAALMMFV-----ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        S YCAI++   +++       ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SCYCAIVVFAALMMFV-----ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

XP_028121250.1 uncharacterized protein LOC114318531 [Camellia sinensis]

4.13e-28

63.04

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Query:  SSCYCAIVVFAALMM------FVASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKL
        +S YCA+V+ A +MM       + + EP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVE+NP I D DDVFPGLVI+ITP  PRKL
Subjt:  SSCYCAIVVFAALMM------FVASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9P3 LysM domain-containing protein

2.21e-28

66.67

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Query:  SSCYCAIVVFAALMMFVASAEPGGGRPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITPP----RKLL
        +S +   V   AL++ VASAE    RPCD+IYVV EGETLH+ISAKCGDPFIV+ NP IQDSDDVFPGL+IQITP     RKLL
Subjt:  SSCYCAIVVFAALMMFVASAEPGGGRPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITPP----RKLL

A0A2C9VSU5 LysM domain-containing protein

1.25e-28

61.96

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Query:  SSCYCAIVVFAALMMFV-----ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        +S +CA+V+   +++       ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSCYCAIVVFAALMMFV-----ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

A0A6A6MRS1 LysM domain-containing protein

6.58e-28

66.67

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Query:  IVVFAALMMFVASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        +++ A++    ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  IVVFAALMMFVASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

A0A7J7I710 LysM domain-containing protein

2.45e-28

63.04

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Query:  SSCYCAIVVFAALMM------FVASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKL
        +S YCA+V+ A +MM       + + EP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVE+NP I D DDVFPGLVI+ITP  PRKL
Subjt:  SSCYCAIVVFAALMM------FVASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKL

B9R9I3 LysM domain-containing protein

1.04e-30

63.44

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Query:  SSCYCAIVVFAALMMFV------ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL
        +SCYCA+V+   +++        ++AEP  G     RPCDEIYVVGEGETLH+IS KCGDPFIVEQNP I D DDVFPGLVI+ITP  PRKLL
Subjt:  SSCYCAIVVFAALMMFV------ASAEPGGG-----RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP--PRKLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52790.1 peptidoglycan-binding LysM domain-containing protein

9.0e-16

51.04

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Query:  SCYCAIVVFAALMMFVAS---AEPGG------------------GRP-CDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP
        S YCA  VFAA+M+ + S   A+ G                    RP CDEIY V EGETL +IS KCGDP+IVE NP I D DD+FPGL+I+ITP
Subjt:  SCYCAIVVFAALMMFVAS---AEPGG------------------GRP-CDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein

3.3e-18

77.08

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Query:  RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQI
        RPC+E+YVVGEG+TLHSIS KCGDPFIVE+NP I D DDVFPGL+I++
Subjt:  RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein

2.3e-19

51.19

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Query:  SCYCAIVVFAALMMFVASAEPGGG----------RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP
        S +C+ VV  +L++ ++  E              +PC+EIY+VGEGETLH+I  KCGDPFIVE+NP I D DDVFPGLV++I P
Subjt:  SCYCAIVVFAALMMFVASAEPGGG----------RPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITP

Sequences

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CDS sequence

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TCAAGCTGCTACTGCGCAATCGTCGTCTTCGCGGCGCTGATGATGTTCGTCGCCTCCGCCGAACCCGGCGGCGGCCGCCCTTGCGACGAGATCTACGTCGTCGGAGAAGG
CGAAACGCTGCACAGCATCAGCGCCAAGTGCGGCGATCCGTTCATTGTAGAGCAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTCGTCATTCAAATTA
CGCCCCCGAGGAAGTTGTTGTTC

mRNA sequence

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Protein sequence

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SSCYCAIVVFAALMMFVASAEPGGGRPCDEIYVVGEGETLHSISAKCGDPFIVEQNPQIQDSDDVFPGLVIQITPPRKLLF

MC07g0395 (gene) of Bitter gourd (Dali-11) v1 genome