CuGenDBv2

Gene ID	MC07g0780
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Genome location	MC07:15434256..15434483
RNA-Seq Expression	MC07g0780
Synteny	MC07g0780
Gene Ontology terms	GO:0042255 - ribosome assembly (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002478 - PUA domain IPR005155 - UPF0113, PUA domain IPR015947 - PUA-like superfamily IPR036974 - PUA domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CBI24745.3 unnamed protein product, partial [Vitis vinifera]

2.53e-35

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDG+VV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

KAF7146724.1 hypothetical protein RHSIM_Rhsim04G0220600 [Rhododendron simsii]

4.58e-35

76.32

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

XP_004134205.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus]

4.58e-35

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

XP_008438877.1 PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo]

4.58e-35

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

XP_034684934.1 60S ribosome subunit biogenesis protein NIP7 homolog [Vitis riparia]

4.58e-35

76.32

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L578 60S ribosome subunit biogenesis protein NIP7 homolog

2.22e-35

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

A0A1S3AXI3 60S ribosome subunit biogenesis protein NIP7 homolog

2.22e-35

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

A0A438CAP4 60S ribosome subunit biogenesis protein NIP7 homolog

2.22e-35

76.32

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

A0A5D3CY17 60S ribosome subunit biogenesis protein NIP7 homolog

2.48e-35

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

A5BNR0 60S ribosome subunit biogenesis protein NIP7 homolog

3.15e-35

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDG+VV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

SwissProt top hits

e value

%identity

Alignment

Q56P27 60S ribosome subunit biogenesis protein NIP7 homolog

1.7e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Q5R9J1 60S ribosome subunit biogenesis protein NIP7 homolog

1.7e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Q9CXK8 60S ribosome subunit biogenesis protein NIP7 homolog

2.2e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Q9WV50 60S ribosome subunit biogenesis protein NIP7 homolog

1.3e-21

64.47

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM DVPL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Q9Y221 60S ribosome subunit biogenesis protein NIP7 homolog

1.7e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Arabidopsis top hits

e value

%identity

Alignment

AT4G15770.1 RNA binding

3.3e-28

73.68

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ++IV GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

Sequences

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CDS sequence

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TTGTGGCTAAAGCCAACATCGGAGATGTCGTTTTTGTACGGAAACTACGTTTTGAGAGGCGGATTGGGGAGAATTATGGAGAATATTGTATCTGGCGATGGCGTTGTAGT
TTATTCGATGCCCGATGTGCCGTTATGGTTCGGTGTGGCGGCCAAGTCGATGCAGGATAGTAAGAAGTTCGATCCCAATCGAATCATGGTGCTTCATCAAGTTGATTATA
GGGAGTAC

mRNA sequence

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Protein sequence

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LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDYREY

MC07g0780 (gene) of Bitter gourd (Dali-11) v1 genome