; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC08g0248 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g0248
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationMC08:1830382..1832981
RNA-Seq ExpressionMC08g0248
SyntenyMC08g0248
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152600.1 uncharacterized protein LOC101213956 [Cucumis sativus]1.28e-11292.4Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSNG S LNASLDTA RE DTLKFPLVNGAN+SSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        GWSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSAVGNINDSFSA+SKKYMEQWLSSLQNC
Subjt:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
XP_008444920.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo]1.28e-11291.81Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSNG S LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        GWSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA+GNINDSFSA+SKKYMEQWLSSLQNC
Subjt:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
XP_022132233.1 uncharacterized protein LOC111005141 isoform X2 [Momordica charantia]1.57e-124100Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
Subjt:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]5.03e-11290Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        WSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA GNINDSFSA+SKKYMEQWLSSLQ+C
Subjt:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]6.34e-11392.98Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSNG S LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        GWSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSAVGNINDSFSA+SKKYMEQWLSSLQNC
Subjt:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881216.20e-11391.81Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSNG S LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNG-SPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        GWSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA+GNINDSFSA+SKKYMEQWLSSLQNC
Subjt:  GWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
A0A6J1BRV5 uncharacterized protein LOC111005141 isoform X14.32e-111100Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSA
        WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSA
Subjt:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSA
A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X27.60e-125100Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
Subjt:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
A0A6J1GID2 uncharacterized protein LOC1114544874.92e-11290Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        WSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA GNINDSFSA+SKKYMEQWLSSLQ+C
Subjt:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
A0A6J1KME1 uncharacterized protein LOC1114959312.44e-11290Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
        WSEP+GPGFQSDD+ DNSFAVLVPCYG +YNDFVDETKNSILSA GNINDSFSA+SKKYMEQWLSSLQ+C
Subjt:  WSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein1.3e-0848.53Show/hide
Query:  SGSES------DDSDWSIGWSEPNGPGFQSDDD-PDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNI
        SGSES      D  +WS+GW+EP+GP FQSDD+  D  F VLVPCY  +  +      N +LSAV N+
Subjt:  SGSES------DDSDWSIGWSEPNGPGFQSDDD-PDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNI
AT4G38060.2 unknown protein1.4e-1551.14Show/hide
Query:  SGSES------DDSDWSIGWSEPNGPGFQSDDD-PDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQ
        SGSES      D  +WS+GW+EP+GP FQSDD+  D  F VLVPCY  +  +      N +LSAV N+ +    D K YMEQWLSSLQ
Subjt:  SGSES------DDSDWSIGWSEPNGPGFQSDDD-PDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQ
AT5G65480.1 unknown protein5.9e-1735.5Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGS--PLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS
        MAV+FP+L  WL  G N + R    S    ++SL  ++++  T K       + SSS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGS--PLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSL
        IGW EP+GPGF+++DD    F VLVP Y  + +   ++  N   S         +A   K MEQWLSS+
Subjt:  IGWSEPNGPGFQSDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCG
GGAACCAGATACTCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AGTATGACATTGTTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCAACGGACCTGGATTCCAG
AGCGATGACGATCCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACACATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAA
CATCAACGATAGCTTTTCTGCTGACAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTCCAGAACTGCTGA
mRNA sequenceShow/hide mRNA sequence
GTTCCTTCACGTTCTACTATCTTGATTATTAAAATCTGGAAACTTGGCCAGAATTATTGAAGAATCTTGATGATTTCCTGAATGTTCAGACTTGAAGTTAGGGAAACTGC
TCCATTTCACCTCTCAGACCTTAGAAATCTACTTGTACTTAGTTTATATTTCTTTGGAAGGACTTGGTACTCATTAGTAAAGAAAATTGAATTCACACATGGCTGTGGCA
TTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCGGGAACCAGATAC
TCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGGAGTATGACATTG
TTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCAACGGACCTGGATTCCAGAGCGATGACGAT
CCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACACATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAACATCAACGATAG
CTTTTCTGCTGACAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTCCAGAACTGCTGATGCACAGGATTTGTAATGGTTGCATGCGGATCTAACTACGATGCTAATG
CTTCGTTTTCGACGACGAAAACATTGTGATATTAGCCATTTAAAAATTGGAAAAAAAATATGAAAAAAGAAAAGAAAAGAAAAAAGAATATAGAAGACTCTCTATTCTTA
TATTGCAGAGAAGTAAATTGGTAAGGTATGAATAGATTGGATGGAATGAGTGGGTGGAGGTCTCATCTTTTCAATTCTTTTGACCATGCTCTTAAGAAGAGAGAACTTAA
AAAATGTCCTCATCTGGGATGAAGCTTGTTACTATGGGATGTAAATATTTTAGACTGGTTTGTAAATATGGAAGGGAGACAGGAAGAAAGAGCTTGAGCTTGAGCTTGAG
CTGACCAGCTGAGGTATGAAGAAAAAGAAGATTAAAAAAATGGTGGAAGTGGAAATGTCCTGTTATTCTTTGAATATCAGTTAATGTATATAGTGGGAAGTGTTTAATTC
TTCTAAATGTTGCTGTAAATAAGTGTCTCAATTGTATGCATCTTGTAAATATGATGTGAGTGGGTTTGGTTCAACCAAATGTTGCTGTAAATGCCTAAAATGGTGGCTCA
TTTATAAAATTTGTTGTACATAGTAACACAGTTGTGCAGAAATGTAAATATCTCTCTCTCTTCCTTTGATGTAATATATTTTGATATATGGCATTAAACCCAATGAAATT
TAACATTTAGTTTTTTA
Protein sequenceShow/hide protein sequence
MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPNGPGFQ
SDDDPDNSFAVLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC