| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 0.0 | 84.14 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGT FRPNLKW FQ+QTHS SPSK P+ASKGREA+FNS RLSFFS+ICEEGES RETLKTYTCLSEAPQTS DDLL+L+EIE+NS A+ LS HYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
IK+T PSK+EDNFSS TS+PTGKAS FG+LMENLDVLEE F ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS SF DLSDLP+EDG HNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
T+ QN D+ VYSGK+ GRRS+K+RA D ADKVAS+P AT A KEK H+S F RK+ NS +RRL+VARNEAEMSTG+KVVANLERIRETLEKES + AS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWA+AA +DIKDL KQLQFGWFC++ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARK LN G RRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KLMKKDIFN+L+GL
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
E RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEET NL HYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| XP_022131819.1 RNA polymerase sigma factor sigC isoform X1 [Momordica charantia] | 0.0 | 100 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| XP_022131821.1 RNA polymerase sigma factor sigC isoform X2 [Momordica charantia] | 0.0 | 89.66 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
IKNTGPSKIEDNFSSCTSLPTGKASHF DLPIEDGGGHNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 0.0 | 84.14 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNS RLSFFS+ CEEGE+ SRE LKTYTCLSEAPQT AD LLDL+E EINS A+ LSH HYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
KN+GPSK+EDNF SCTSLPTG+AS F MLMENLDVLEE FTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK S SSF DLSDLPIE GG HNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
TD QN +IIVYSGK+ GRRS+K RA D ADKVAS+P AT AAKEKF +S RK+ NS++RR +VARNEAEMSTGVKVVANLERIRETLEKES + AS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADA+ IDIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARKALNN RRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDIFNLLE L
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
E RERQVL LRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEET NL HYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 0.0 | 84.6 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKW FQ+QTHSR SPSK +P+ASKGREA+FNS RLSFFS+I EEGES SRETLKTYTCLSEAPQTSADDLL+L+EIE+N A+ LS HYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIE----DGGGHN
IKNT PSK+EDNFSSCTS P+GKAS FGMLMENLDVLEE FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS SF DLSDLPIE D G HN
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIE----DGGGHN
Query: VNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESE
VNQKT +NDDIIVYSGK+ RRS+K+RA D ADKV SQP AT AAKEK H+SA RK+ NSR+RRL++ARNEAEMSTGVKVVANLERIRETLEKES
Subjt: VNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESE
Query: KRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN
+ SMSCWA+AAG+DIKDL KQLQFGWFCQ+ELLRSTNSL+LFLA+KYRC+GLPMEDLVQAG++GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN
Subjt: KRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN
Query: SRGIQIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNL
+RGIQIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPEETVKQKLMKKDIFN+
Subjt: SRGIQIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNL
Query: LEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
LEGLE RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL++EET N HYLD
Subjt: LEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BBM8 RNA polymerase sigma factor sigC | 0.0 | 84.14 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGT FRPNLKW FQ+QTHS SPSK P+ASKGREA+FNS RLSFFS+ICEEGES RETLKTYTCLSEAPQTS DDLL+L+EIE+NS A+ LS HYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
IK+T PSK+EDNFSS TS+PTGKAS FG+LMENLDVLEE F ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS SF DLSDLP+EDG HNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
T+ QN D+ VYSGK+ GRRS+K+RA D ADKVAS+P AT A KEK H+S F RK+ NS +RRL+VARNEAEMSTG+KVVANLERIRETLEKES + AS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWA+AA +DIKDL KQLQFGWFC++ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARK LN G RRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KLMKKDIFN+L+GL
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
E RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEET NL HYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| A0A6J1BQJ7 RNA polymerase sigma factor sigC isoform X2 | 0.0 | 89.66 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
IKNTGPSKIEDNFSSCTSLPTGKASHF DLPIEDGGGHNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 0.0 | 100 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 0.0 | 84.14 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNS RLSFFS+ CEEGE+ SRE LKTYTCLSEAPQT AD LLDL+E EINS A+ LSH HYG
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYG
Query: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
KN+GPSK+EDNF SCTSLPTG+AS F MLMENLDVLEE FTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK S SSF DLSDLPIE GG HNVNQK
Subjt: IKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQK
Query: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
TD QN +IIVYSGK+ GRRS+K RA D ADKVAS+P AT AAKEKF +S RK+ NS++RR +VARNEAEMSTGVKVVANLERIRETLEKES + AS
Subjt: TDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS
Query: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADA+ IDIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGI
Subjt: MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARKALNN RRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDIFNLLE L
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGL
Query: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
E RERQVL LRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEET NL HYLD
Subjt: EPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 0.0 | 83.84 | Show/hide |
Query: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDE--IEINSRARPLSHFH
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNS RLSFFS+ CEEGE+ SRE LKTYTCLSEAPQT AD LLDL+E +EINS A+ LSH H
Subjt: MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDE--IEINSRARPLSHFH
Query: YGIKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVN
YG KN+GPSK+EDNF SCTSLPTG+AS F MLMENLDVLEE FTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK S SSF DLSDLPIE GG HNVN
Subjt: YGIKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVN
Query: QKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKR
QKTD QN +IIVYSGK+ GRRS+K RA D ADKVAS+P AT AAKEKF +S RK+ NS++RR +VARNEAEMSTGVKVVANLERIRETLEKES +
Subjt: QKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKR
Query: ASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
ASMSCWADA+ IDIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SR
Subjt: ASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
Query: GIQIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLE
GIQIPWSLTKAINQIQKARKALNN RRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDIFNLLE
Subjt: GIQIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLE
Query: GLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
LE RERQVL LRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEET NL HYLD
Subjt: GLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 4.8e-52 | 31.27 | Show/hide |
Query: NTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDK------ADKVASQPPATG-AAKEKFHNS-ARFPRKRVF
N +S + S S+ + DL E V ++ + + V S ++ R++ + + +K + K S P A+E HN R+ R
Subjt: NTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDK------ADKVASQPPATG-AAKEKFHNS-ARFPRKRVF
Query: NSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAG
+S +L+ R E E+S G++ + LER++ L + S ++ + + WA AAG+D K L +++ G C++++++S LV+ +AK Y+ G+ ++DLVQ G
Subjt: NSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAG
Query: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVD
G+++G E+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + + ++ +++IA+ATGL + ++ K S+D
Subjt: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVD
Query: QKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLC
QK+G N+K E AD + E+ + ++ M++D+ +L+ L RE+QV+ R+G++D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L
Subjt: QKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLC
Query: HYL
YL
Subjt: HYL
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| O24621 RNA polymerase sigma factor sigC | 1.1e-112 | 44.95 | Show/hide |
Query: SARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYGIKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEA
+ R SF S++ EE ++LK C S +P T+ +++ +E+ +N G E ++SS + L + +L +NL LEE
Subjt: SARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYGIKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEA
Query: FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS-TSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPAT
F + +ERDI+LQ+ KLGA E F TCLSR +S TS D ++L N + V S +KV +++ + + +S P
Subjt: FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS-TSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPAT
Query: GAAKEKFHNSARFPR-KRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVL
N+ PR +R R++R ++RNE EMSTGVK+VA++ERIR LE+ES K AS+SCWA AAG++ K L + L +GW+C++EL++ST SLVL
Subjt: GAAKEKFHNSARFPR-KRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVL
Query: FLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYSDDDIAKAT
FLA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L ++G + +D++IAK T
Subjt: FLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYSDDDIAKAT
Query: GLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWV
G + K+R A+ CLKVVGS+D+K+GD K++EFT DT+++SPEE V ++ ++DI +LLEGLEPRE+QV+ LRYGLQD++PKSLEEIGKLL VSKEW+
Subjt: GLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWV
Query: RKIEKKAMTKLKNEETTGNLCHYLD
RKIE++AM KL+++ +L +YL+
Subjt: RKIEKKAMTKLKNEETTGNLCHYLD
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| P26683 RNA polymerase sigma factor SigA | 1.1e-45 | 33.33 | Show/hide |
Query: RRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIG
R RL+ A E E++ + + LER+RE L ++ E+ S WA+A + + +L G ++++++S LV+ +AKKY GL +DL+Q G++G
Subjt: RRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIG
Query: VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNG-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKM
+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+ R+ ++++IA + + K+R + ++ S++ +
Subjt: VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNG-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKM
Query: GDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYL
G + + +F ++ ++PE+ V + L+++D+ +L+ L PRER VL LRYGL D + K+LEEIG++ +V++E +R+IE KA+ KL++ L Y+
Subjt: GDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYL
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| P38023 RNA polymerase sigma factor SigA1 | 6.2e-44 | 32.15 | Show/hide |
Query: ARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSR--RRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFG
A D D V A AK K + R++ R RL+ A E E++ + + LERIR+ L ++ ++ S + WA A + + ++L G
Subjt: ARDKADKVASQPPATGAAKEKFHNSARFPRKRVFNSR--RRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFG
Query: WFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNN
++++++S LV+ +AKKY GL +DL+Q G++G+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+
Subjt: WFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNN
Query: G-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKS
R+ ++++IA + + K+R + ++ S++ +G + + +F + ++PE+ V + L+++D+ +L L PRER VL LRYGL D + K+
Subjt: G-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKS
Query: LEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYL
LEEIG+L +V++E +R+IE KA+ KL++ L Y+
Subjt: LEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 3.4e-42 | 29.81 | Show/hide |
Query: IVYSGKKVGRRSIKERARDKADKVASQ--PPATGAAKEKFHNSARFP---RKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSC
IV S +++ RR+ K R K++ V + P +AK+K+ A + ++ ++L+ A+ EAE+ + ++ + LE+++ LE ++ ++
Subjt: IVYSGKKVGRRSIKERARDKADKVASQ--PPATGAAKEKFHNSARFP---RKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSC
Query: WADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
WA+A GI L + G + +L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P
Subjt: WADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
Query: WSLTKAINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEP
++ + ++ +ARK + G+ R S +++A G+ K+ + S+ Q + + + E T D+ I++P +V ++LM+ + NLL L P
Subjt: WSLTKAINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEP
Query: RERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
+ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK + L Y D
Subjt: RERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 3.4e-53 | 31.27 | Show/hide |
Query: NTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDK------ADKVASQPPATG-AAKEKFHNS-ARFPRKRVF
N +S + S S+ + DL E V ++ + + V S ++ R++ + + +K + K S P A+E HN R+ R
Subjt: NTCLSRTLKTSTSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDK------ADKVASQPPATG-AAKEKFHNS-ARFPRKRVF
Query: NSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAG
+S +L+ R E E+S G++ + LER++ L + S ++ + + WA AAG+D K L +++ G C++++++S LV+ +AK Y+ G+ ++DLVQ G
Subjt: NSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAG
Query: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVD
G+++G E+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + + ++ +++IA+ATGL + ++ K S+D
Subjt: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVD
Query: QKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLC
QK+G N+K E AD + E+ + ++ M++D+ +L+ L RE+QV+ R+G++D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L
Subjt: QKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLC
Query: HYL
YL
Subjt: HYL
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| AT1G64860.1 sigma factor A | 4.9e-28 | 30.34 | Show/hide |
Query: VARNEAEMSTGVKVVANLERIRETLEKE-SEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQG
V R ++ +G+++ + R+++ L E S+++ ++S A +L L + +L S LV+ +A++Y G M DLVQ G IG+L+G
Subjt: VARNEAEMSTGVKVVANLERIRETLEKE-SEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQG
Query: VERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLN
+E+FD +GFR STY+ +WIR+ +SR + NSR +++P L + + I+ A+ L S D IA++ + KVR A+ + V S+D+ LN
Subjt: VERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLN
Query: ----MKYMEFTADTSIQ-SPEETVKQKLMKKDIFNLLEG-LEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
+ + ADT ++ +P +K+++ L+ L RE++++ L YGL D + + E+I K + +S+E VR++ A+ KLK+
Subjt: ----MKYMEFTADTSIQ-SPEETVKQKLMKKDIFNLLEG-LEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
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| AT2G36990.1 RNApolymerase sigma-subunit F | 2.4e-43 | 29.81 | Show/hide |
Query: IVYSGKKVGRRSIKERARDKADKVASQ--PPATGAAKEKFHNSARFP---RKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSC
IV S +++ RR+ K R K++ V + P +AK+K+ A + ++ ++L+ A+ EAE+ + ++ + LE+++ LE ++ ++
Subjt: IVYSGKKVGRRSIKERARDKADKVASQ--PPATGAAKEKFHNSARFP---RKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSC
Query: WADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
WA+A GI L + G + +L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P
Subjt: WADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
Query: WSLTKAINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEP
++ + ++ +ARK + G+ R S +++A G+ K+ + S+ Q + + + E T D+ I++P +V ++LM+ + NLL L P
Subjt: WSLTKAINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEP
Query: RERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
+ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK + L Y D
Subjt: RERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 7.7e-114 | 44.95 | Show/hide |
Query: SARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYGIKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEA
+ R SF S++ EE ++LK C S +P T+ +++ +E+ +N G E ++SS + L + +L +NL LEE
Subjt: SARLSFFSAICEEGESSSRETLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYGIKNTGPSKIEDNFSSCTSLPTGKASHFGMLMENLDVLEEA
Query: FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS-TSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPAT
F + +ERDI+LQ+ KLGA E F TCLSR +S TS D ++L N + V S +KV +++ + + +S P
Subjt: FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTS-TSSFLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPAT
Query: GAAKEKFHNSARFPR-KRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVL
N+ PR +R R++R ++RNE EMSTGVK+VA++ERIR LE+ES K AS+SCWA AAG++ K L + L +GW+C++EL++ST SLVL
Subjt: GAAKEKFHNSARFPR-KRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVL
Query: FLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYSDDDIAKAT
FLA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L ++G + +D++IAK T
Subjt: FLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYSDDDIAKAT
Query: GLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWV
G + K+R A+ CLKVVGS+D+K+GD K++EFT DT+++SPEE V ++ ++DI +LLEGLEPRE+QV+ LRYGLQD++PKSLEEIGKLL VSKEW+
Subjt: GLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWV
Query: RKIEKKAMTKLKNEETTGNLCHYLD
RKIE++AM KL+++ +L +YL+
Subjt: RKIEKKAMTKLKNEETTGNLCHYLD
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| AT5G13730.1 sigma factor 4 | 1.0e-33 | 30.3 | Show/hide |
Query: DRQNDDIIVYSGKKVGRRSIKERARDKADKVASQ----PPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEK
DR D ++ +K G +S K R R + +V + A E + P V + R + E ++ +K A LE + ++E E
Subjt: DRQNDDIIVYSGKKVGRRSIKERARDKADKVASQ----PPATGAAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEK
Query: RASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS
A G + ++ L + ++ R LV+ +A Y+ GL ++DL+Q G+IG+L+G ERFDP RG++ STY+ +WI++++ R +A S
Subjt: RASMSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS
Query: RGIQIPWSLTKAINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNL
R +++P S+ + ++ +A L RR S ++IA+ L ++ VR+A + S+D+ M E PEE VK++ MK +I L
Subjt: RGIQIPWSLTKAINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIFNL
Query: LEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHY
L L RE +VL L +GL P S EEIGK L +S+E VR+I A+ KL+N +L Y
Subjt: LEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETTGNLCHY
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