; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC08g0691 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g0691
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSm protein F
Genome locationMC08:5556538..5557569
RNA-Seq ExpressionMC08g0691
SyntenyMC08g0691
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4298371.1 unnamed protein product [Prunus armeniaca]3.32e-3895.38Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        Q+IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

KAF3452786.1 hypothetical protein FNV43_RR03219 [Rhamnella rubrinervis]1.92e-3796.88Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        +IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

ONI36416.1 hypothetical protein PRUPE_1G584000 [Prunus persica]1.54e-3795.31Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]1.59e-3898.46Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
         SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]1.59e-3898.46Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
         SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F7.72e-3998.46Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
         SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

A0A5D3DWN8 Sm protein F7.72e-3998.46Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
         SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

A0A6J1CSK0 Sm protein F7.72e-3998.46Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
         SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

A0A6J5WDD8 Sm protein F1.61e-3895.38Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        Q+IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

A0A803QDU2 Uncharacterized protein6.54e-3895.38Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        +SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F6.4e-2579.69Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

P62307 Small nuclear ribonucleoprotein F6.4e-2579.69Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

P62321 Small nuclear ribonucleoprotein F6.4e-2579.69Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

Q3T0Z8 Small nuclear ribonucleoprotein F6.4e-2579.69Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

Q9SUM2 Probable small nuclear ribonucleoprotein F2.1e-2890.62Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein2.3e-1489.74Show/hide
Query:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIR
Subjt:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

AT2G43810.1 Small nuclear ribonucleoprotein family protein5.4e-1144.07Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

AT2G43810.2 Small nuclear ribonucleoprotein family protein5.4e-1144.07Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

AT4G30220.1 small nuclear ribonucleoprotein F1.5e-2990.62Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIR
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR

AT4G30220.2 small nuclear ribonucleoprotein F3.9e-3090.77Show/hide
Query:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR
        Q+IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIR
Subjt:  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAGCATCCCAGTTAACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTCGTCTCAGTGGA
CTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGG
mRNA sequenceShow/hide mRNA sequence
CAGAGCATCCCAGTTAACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTCGTCTCAGTGGA
CTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGG
Protein sequenceShow/hide protein sequence
QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIR