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MC08g0790 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g0790
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPhotosystem II protein D1
Genome locationMC08:6464782..6465046
RNA-Seq ExpressionMC08g0790
SyntenyMC08g0790
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0009536 - plastid (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000484 - Photosynthetic reaction centre, L/M
IPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1226459.1 Photosystem Q(B) protein [Morella rubra]3.39e-1246.59Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                  F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

MBA0620661.1 hypothetical protein [Gossypium davidsonii]1.57e-1348.94Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR-VCPLELMQRLLLLT-----FFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        G PYEL  LHFL+GVA  MGR  EL     +CP   +  L L+      F I+PI +   +  +  GIS T NF V+F  E NIFMHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR-VCPLELMQRLLLLT-----FFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

XP_022853465.1 photosystem II protein D1-like [Olea europaea var. sylvestris]4.18e-1246.15Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLN---RVCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL      R              F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLN---RVCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

YP_009183342.1 photosystem II Q(b) protein D1 [Cymbidium ensifolium]7.16e-1243.3Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL           +    P+     +    F I+PI +   +  + GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV

YP_009729237.1 photosystem II protein D1 [Allium mairei]5.20e-1243.3Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL           +    P+     +    F I+PI +   +  + GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV

TrEMBL top hitse value%identityAlignment
A0A0S1YC58 Photosystem II protein D13.47e-1243.3Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL           +    P+     +    F I+PI +   +  + GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV

A0A6A1WMD0 Photosystem Q(B) protein1.64e-1246.59Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                  F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

A0A6B9VXF3 Photosystem II protein D12.52e-1243.3Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL           +    P+     +    F I+PI +   +  + GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV

A0A6M8U259 Photosystem II protein D12.52e-1243.3Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL           +    P+     +    F I+PI +   +  + GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHEL----------VLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV

A0A7J8S3I3 Uncharacterized protein7.60e-1448.94Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR-VCPLELMQRLLLLT-----FFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        G PYEL  LHFL+GVA  MGR  EL     +CP   +  L L+      F I+PI +   +  +  GIS T NF V+F  E NIFMHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR-VCPLELMQRLLLLT-----FFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

SwissProt top hitse value%identityAlignment
A4QJ96 Photosystem II protein D14.5e-1043.62Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                        F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

A4QJI0 Photosystem II protein D14.5e-1043.62Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                        F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

P13910 Photosystem II protein D11.6e-1044.68Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL          V             F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

Q3V554 Photosystem II protein D14.5e-1043.62Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                        F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

Q85C23 Photosystem II protein D14.5e-1043.62Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                        F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV

Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A3.2e-1143.62Show/hide
Query:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV
        GGPYEL  LHFL+GVA  MGR  EL                        F I+PI +   +  +  GIS T NF ++F  E NI MHPFHMLGV
Subjt:  GGPYELTALHFLIGVAFIMGRSHELVLNR------VCPLELMQRLLLLTFFIHPINKTLMTIYLK-GISSTINFEVLFLVERNIFMHPFHMLGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTGGTCCTTATGAGCTAACTGCACTACACTTCTTAATCGGTGTAGCCTTTATCATGGGACGATCTCATGAACTTGTTCTTAACAGGGTATGCCCCTTGGAATTGATGCA
ACGACTACTTCTACTAACTTTCTTTATTCATCCAATTAACAAAACTTTAATGACAATCTACCTCAAAGGAATCTCAAGTACTATTAACTTCGAGGTTCTATTCCTAGTCG
AACGTAACATCTTTATGCACCCATTTCACATGTTAGGTGTA
mRNA sequenceShow/hide mRNA sequence
GGTGGTCCTTATGAGCTAACTGCACTACACTTCTTAATCGGTGTAGCCTTTATCATGGGACGATCTCATGAACTTGTTCTTAACAGGGTATGCCCCTTGGAATTGATGCA
ACGACTACTTCTACTAACTTTCTTTATTCATCCAATTAACAAAACTTTAATGACAATCTACCTCAAAGGAATCTCAAGTACTATTAACTTCGAGGTTCTATTCCTAGTCG
AACGTAACATCTTTATGCACCCATTTCACATGTTAGGTGTA
Protein sequenceShow/hide protein sequence
GGPYELTALHFLIGVAFIMGRSHELVLNRVCPLELMQRLLLLTFFIHPINKTLMTIYLKGISSTINFEVLFLVERNIFMHPFHMLGV