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MC08g0824 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g0824
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationMC08:6720280..6722328
RNA-Seq ExpressionMC08g0824
SyntenyMC08g0824
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]4.05e-7693.69Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NE+CR NWRED
Subjt:  NEDCRINWRED

XP_022152387.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]3.46e-7794.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+DMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NE+CR NWRED
Subjt:  NEDCRINWRED

XP_022152562.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]3.73e-81100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NEDCRINWRED
Subjt:  NEDCRINWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]1.16e-7592.79Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NEDCR NWRED
Subjt:  NEDCRINWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]4.05e-7693.69Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NE+CR NWRED
Subjt:  NEDCRINWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.96e-7693.69Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NE+CR NWRED
Subjt:  NEDCRINWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit1.96e-7693.69Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NE+CR NWRED
Subjt:  NEDCRINWRED

A0A6J1DDT5 DNA-directed RNA polymerase subunit1.68e-7794.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+DMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NE+CR NWRED
Subjt:  NEDCRINWRED

A0A6J1DGL3 DNA-directed RNA polymerase subunit1.81e-81100Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NEDCRINWRED
Subjt:  NEDCRINWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit5.63e-7692.79Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+DMKNAAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
        NEDCR NWRED
Subjt:  NEDCRINWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC108.3e-1739.47Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED-MKNAAQTEATCPN--CAFGKAAFIQVQLRSADEPATTFY
        M+FCPTCGN L   +   G+++ F C TCPY  H      +  +    +KE++ ++  E+  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED-MKNAAQTEATCPN--CAFGKAAFIQVQLRSADEPATTFY

Query:  KCMNEDCRINWRED
        +C    C+  WRE+
Subjt:  KCMNEDCRINWRED

Q04307 DNA-directed RNA polymerase III subunit RPC101.0e-1438.6Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPN---CAFGKAAFIQVQLRSADEPATTFY
        + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++      N  QT+  CPN   C    A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPN---CAFGKAAFIQVQLRSADEPATTFY

Query:  KCMNEDCRINWRED
        KC+N  C   W+E+
Subjt:  KCMNEDCRINWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC101.6e-1541.67Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV H   R    RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNE

Query:  DCRINWRE
         C   WR+
Subjt:  DCRINWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC102.4e-1641.28Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISD-EDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV ++  +V  ++   L  KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISD-EDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMN

Query:  EDCRINWRE
          C   WR+
Subjt:  EDCRINWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC101.4e-1641.28Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISD-EDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV ++  +V  ++   L  KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISD-EDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMN

Query:  EDCRINWRE
          C   WR+
Subjt:  EDCRINWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal1.6e-3151.35Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV +++ +V+IK+KQ L+KK +E +++ +D+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
           C   WRE+
Subjt:  NEDCRINWRED

AT2G38560.1 transcript elongation factor IIS8.3e-0439.13Show/hide
Query:  AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWR
        A+  +  C  C   K  + Q+Q RSADEP TT+  C+N  C  +W+
Subjt:  AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal1.7e-3354.95Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G SSRFFC TCPYV ++E RV+IK+KQ L+KK +EP+++ +D+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCM

Query:  NEDCRINWRED
           C   WRE+
Subjt:  NEDCRINWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCTGTCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGAAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCACTTGGAGAA
TAGGGTAAAGATCAAAAGAAAGCAGCATTTGATAAAGAAGGAATTAGAACCCATAATCTCTGATGAGGATATGAAAAATGCAGCTCAAACTGAAGCAACGTGTCCAAATT
GTGCGTTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACTTTTTACAAATGCATGAACGAGGACTGCAGAATTAATTGGCGCGAG
GAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCTGTCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGAAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCACTTGGAGAA
TAGGGTAAAGATCAAAAGAAAGCAGCATTTGATAAAGAAGGAATTAGAACCCATAATCTCTGATGAGGATATGAAAAATGCAGCTCAAACTGAAGCAACGTGTCCAAATT
GTGCGTTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACTTTTTACAAATGCATGAACGAGGACTGCAGAATTAATTGGCGCGAG
GAT
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRE
D