; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC08g1047 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1047
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionProtein transport protein SEC13
Genome locationMC08:8469644..8469919
RNA-Seq ExpressionMC08g1047
SyntenyMC08g1047
Gene Ontology termsGO:0006606 - protein import into nucleus (biological process)
GO:0090114 - COPII-coated vesicle budding (biological process)
GO:0030127 - COPII vesicle coat (cellular component)
GO:0031080 - nuclear pore outer ring (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR037363 - Sec13/Seh1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581882.1 Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. sororia]4.43e-6096.74Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

XP_004150601.1 protein transport protein SEC13 homolog B [Cucumis sativus]2.12e-5995.65Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

XP_022153671.1 protein transport protein SEC13 homolog B [Momordica charantia]4.59e-61100Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

XP_023528381.1 protein transport protein SEC13 homolog B [Cucurbita pepo subsp. pepo]7.45e-6096.74Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

XP_038878202.1 protein transport protein SEC13 homolog B-like isoform X2 [Benincasa hispida]1.18e-5994.57Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+++EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDW+QVST+EP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

TrEMBL top hitse value%identityAlignment
A0A0A0LDB9 WD_REPEATS_REGION domain-containing protein1.02e-5995.65Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVDGDW+QVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

A0A1S4DWT1 protein transport protein SEC13 homolog B2.91e-5994.57Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVDGDW+QVSTV+P
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

A0A5D3CBF9 Protein transport protein SEC13-like protein B2.91e-5994.57Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+V+EGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVDGDW+QVSTV+P
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

A0A6J1DLE1 protein transport protein SEC13 homolog B2.22e-61100Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

A0A6J1IY63 protein transport protein SEC13 homolog B2.91e-5995.65Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDVSWAPNLGLPKSTIASASQDGKVVIWT+VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNV+LWKEAVD DW+QVSTVEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

SwissProt top hitse value%identityAlignment
O64740 Protein transport protein SEC13 homolog B2.1e-4584.78Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLGLPKSTIAS SQDGKV+IWT+ +EG+QWEGKVLKDF TPVWRVSWSLTGN+LAV+DGNNNVT+WKEAVDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

Q3ZCC9 Protein SEC13 homolog8.7e-2860.44Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTV
        DWVRDV+WAP++GLP STIAS SQDG+V +WT     G+ W  K+L  F   VW VSWS+T NILAV+ G+N VTLWKE+VDG W  +S V
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTV

Q5XFW8 Protein SEC13 homolog5.1e-2861.54Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTV
        DWVRDV+WAP++GLP STIAS SQDG+V IWT     G+ W  K+L  F   VW VSWS+T NILAV+ G+N VTLWKE+VDG W  +S V
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTV

Q9D1M0 Protein SEC13 homolog5.1e-2861.54Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTV
        DWVRDV+WAP++GLP STIAS SQDG+V IWT     G+ W  K+L  F   VW VSWS+T NILAV+ G+N VTLWKE+VDG W  +S V
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTI-VREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTV

Q9SRI1 Protein transport protein SEC13 homolog A7.8e-4583.7Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLGLPKSTIAS S+DGKV+IWTI +EG+QWEG VLKDFKTPVWRVSWSLTGN+LAV+DGNNNVT+WKE+VDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

Arabidopsis top hitse value%identityAlignment
AT1G64350.1 Transducin/WD40 repeat-like superfamily protein2.2e-1032.32Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKV-------LKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        D V  +SWAPN+G P   +A A+  G + IW +    D  EG++       L   +  VW++ W ++G  LA    +  V LW+  ++G+W + +T+EP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKV-------LKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

AT2G30050.1 transducin family protein / WD-40 repeat family protein1.5e-4684.78Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLGLPKSTIAS SQDGKV+IWT+ +EG+QWEGKVLKDF TPVWRVSWSLTGN+LAV+DGNNNVT+WKEAVDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

AT3G01340.1 Transducin/WD40 repeat-like superfamily protein5.6e-4683.7Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLGLPKSTIAS S+DGKV+IWTI +EG+QWEG VLKDFKTPVWRVSWSLTGN+LAV+DGNNNVT+WKE+VDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP

AT3G01340.2 Transducin/WD40 repeat-like superfamily protein5.6e-4683.7Show/hide
Query:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP
        DWVRDV+WAPNLGLPKSTIAS S+DGKV+IWTI +EG+QWEG VLKDFKTPVWRVSWSLTGN+LAV+DGNNNVT+WKE+VDG+WEQV+ VEP
Subjt:  DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACTGGGTTAGAGATGTTTCATGGGCTCCGAACCTCGGTCTGCCAAAATCAACGATCGCAAGCGCCTCTCAGGATGGGAAAGTCGTTATATGGACCATAGTCAGAGAAGG
AGATCAATGGGAAGGGAAGGTACTAAAGGACTTCAAAACCCCTGTTTGGAGGGTATCATGGTCGTTGACTGGCAACATCCTGGCCGTGGCTGATGGAAATAACAATGTTA
CTTTATGGAAGGAAGCAGTGGATGGAGATTGGGAGCAAGTTTCAACAGTTGAGCCT
mRNA sequenceShow/hide mRNA sequence
GACTGGGTTAGAGATGTTTCATGGGCTCCGAACCTCGGTCTGCCAAAATCAACGATCGCAAGCGCCTCTCAGGATGGGAAAGTCGTTATATGGACCATAGTCAGAGAAGG
AGATCAATGGGAAGGGAAGGTACTAAAGGACTTCAAAACCCCTGTTTGGAGGGTATCATGGTCGTTGACTGGCAACATCCTGGCCGTGGCTGATGGAAATAACAATGTTA
CTTTATGGAAGGAAGCAGTGGATGGAGATTGGGAGCAAGTTTCAACAGTTGAGCCT
Protein sequenceShow/hide protein sequence
DWVRDVSWAPNLGLPKSTIASASQDGKVVIWTIVREGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGDWEQVSTVEP