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MC08g1066 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1066
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein, putative
Genome locationMC08:8769244..8769360
RNA-Seq ExpressionMC08g1066
SyntenyMC08g1066
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051178.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.43e-1382.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

XP_004146851.1 putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis sativus]3.43e-1382.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

XP_008447611.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis melo]3.43e-1382.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

XP_022148095.1 putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charantia]2.07e-1484.62Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKLGRMGDA+KVFDKM L+SVVSWNTMVSG+AYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

XP_022997825.1 putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima]2.51e-1379.49Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMY KL RMGDARKVFDKM ++SV+SWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

TrEMBL top hitse value%identityAlignment
A0A0A0LFT1 Uncharacterized protein1.66e-1382.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

A0A5A7U7B1 Putative pentatricopeptide repeat-containing protein1.66e-1382.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

A0A5D3BVI7 Putative pentatricopeptide repeat-containing protein1.66e-1382.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKL RM DARKVFDKM ++SVVSWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

A0A6J1D1Z6 putative pentatricopeptide repeat-containing protein At1g176301.00e-1484.62Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMYAKLGRMGDA+KVFDKM L+SVVSWNTMVSG+AYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

A0A6J1KAZ0 putative pentatricopeptide repeat-containing protein At1g176301.21e-1379.49Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        ++GMY KL RMGDARKVFDKM ++SV+SWNTMVSGYAYN
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

SwissProt top hitse value%identityAlignment
O23169 Pentatricopeptide repeat-containing protein At4g371706.8e-0659.46Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA
        ++ MYAK G + DARKVFD+M  R + SWN MV+GYA
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA

O80647 Pentatricopeptide repeat-containing protein At2g396202.3e-0658.97Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        +V MY K   +  AR+VFDKMH++ VV+WNTMVSG A N
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

Q9LFI1 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial3.0e-0654.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA
        ++ MYAK G +G AR++FD M  R VVSW+T++ GYA
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA

Q9SKQ4 Pentatricopeptide repeat-containing protein At2g210903.6e-0763.89Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY
        ++GMY K G+  DA KVFD+MHLR++ SWN MVSGY
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307008.8e-0652.78Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY
        ++GMYAK G + +AR++FD M  ++ V+WNTM+SGY
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein6.3e-0758.33Show/hide
Query:  MYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        MYAK  ++ +ARKVFD+M  R +VSWNT+V+GY+ N
Subjt:  MYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.5e-0863.89Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY
        ++GMY K G+  DA KVFD+MHLR++ SWN MVSGY
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGY

AT2G39620.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-0758.97Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN
        +V MY K   +  AR+VFDKMH++ VV+WNTMVSG A N
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN

AT3G53360.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-0754.05Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA
        ++ MYAK G +G AR++FD M  R VVSW+T++ GYA
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA

AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein4.8e-0759.46Show/hide
Query:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA
        ++ MYAK G + DARKVFD+M  R + SWN MV+GYA
Subjt:  IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGC
CTATAAT
mRNA sequenceShow/hide mRNA sequence
ATTGTCGGGATGTATGCAAAGCTCGGACGAATGGGTGATGCTCGGAAAGTGTTCGATAAAATGCACCTCAGAAGTGTAGTTTCTTGGAACACTATGGTTTCTGGTTATGC
CTATAAT
Protein sequenceShow/hide protein sequence
IVGMYAKLGRMGDARKVFDKMHLRSVVSWNTMVSGYAYN