; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC08g1399 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1399
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationMC08:14904486..14904617
RNA-Seq ExpressionMC08g1399
SyntenyMC08g1399
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044882.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.11e-0873.68Show/hide
Query:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
         K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Subjt:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
PWA86048.1 ribosomal protein L2, plastid [Artemisia annua]1.74e-0865.85Show/hide
Query:  IRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
        + F K F DLSKLEPL  + Y+ WS+KLLIFFEQLE+DY+L
Subjt:  IRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
TYK04337.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.78e-0873.68Show/hide
Query:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
         K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Subjt:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]8.90e-1073.81Show/hide
Query:  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
        +IR GK   DLSKLEPL  S YR WSQKLLIFFEQLE+DYI+
Subjt:  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
XP_039046231.1 uncharacterized protein LOC120186344 [Hibiscus syriacus]8.05e-0964.29Show/hide
Query:  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
        S  F K+ LDLSKLEPL ++ Y  WSQ+++IFFEQLEVDY+L
Subjt:  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
TrEMBL top hitse value%identityAlignment
A0A2U1PJW3 Ribosomal protein L2, plastid8.43e-0965.85Show/hide
Query:  IRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
        + F K F DLSKLEPL  + Y+ WS+KLLIFFEQLE+DY+L
Subjt:  IRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
A0A5A7SKK3 Ty1-copia retrotransposon protein1.02e-0873.68Show/hide
Query:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
         K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Subjt:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
A0A5A7TNG2 Ty1-copia retrotransposon protein1.02e-0873.68Show/hide
Query:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
         K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Subjt:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
A0A5D3BXT2 Ty1-copia retrotransposon protein8.64e-0973.68Show/hide
Query:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
         K   DLSKLEPL  + YR WSQKLLIFFEQLEVDY+L
Subjt:  GKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
A0A6J1DWN1 uncharacterized protein LOC1110251974.31e-1073.81Show/hide
Query:  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
        +IR GK   DLSKLEPL  S YR WSQKLLIFFEQLE+DYI+
Subjt:  SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAATTCGATTCGGTAAGTTTTTTCTAGATCTATCCAAACTCGAACCATTGGGTCAATCCTATTACCGATGCTGGTCTCAGAAGCTATTGATCTTTTTCGAGCAATTGGA
GGTAGACTACATTCTTCTGCTA
mRNA sequenceShow/hide mRNA sequence
TCAATTCGATTCGGTAAGTTTTTTCTAGATCTATCCAAACTCGAACCATTGGGTCAATCCTATTACCGATGCTGGTCTCAGAAGCTATTGATCTTTTTCGAGCAATTGGA
GGTAGACTACATTCTTCTGCTA
Protein sequenceShow/hide protein sequence
SIRFGKFFLDLSKLEPLGQSYYRCWSQKLLIFFEQLEVDYILLL