CuGenDBv2

Gene ID	MC08g1464
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DEAD-box ATP-dependent RNA helicase FANCM
Genome location	MC08:18741081..18741640
RNA-Seq Expression	MC08g1464
Synteny	MC08g1464
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016020 - membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022152476.1 DEAD-box ATP-dependent RNA helicase FANCM [Momordica charantia]

4.75e-88

79.38

Show/hide

Query:  ILLNSELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIKETVPVKCPLFY-IEPQFPLADECS
        ILL+SELGSCSVRTA+DL V T+ VN+PTTSQ       ILSSPETDGVNVLEDKAMNQIE IHQTAISNRTL  K     + P+   IEPQFPLADECS
Subjt:  ILLNSELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIKETVPVKCPLFY-IEPQFPLADECS

Query:  KIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
         I+TQLSPRLTNLVKSGFVPDS IDDCGNSSRQRIYEF IP+FILPVQVDGE LLKSPS GTSERINCNGGSC GDD+FLSTGEV+PSLLK  D
Subjt:  KIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

XP_022939323.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X5 [Cucurbita moschata]

3.83e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

XP_022939324.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X6 [Cucurbita moschata]

3.45e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

XP_022939325.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucurbita moschata]

3.24e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

XP_022939326.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X8 [Cucurbita moschata]

2.88e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DHU7 DEAD-box ATP-dependent RNA helicase FANCM

2.30e-88

79.38

Show/hide

Query:  ILLNSELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIKETVPVKCPLFY-IEPQFPLADECS
        ILL+SELGSCSVRTA+DL V T+ VN+PTTSQ       ILSSPETDGVNVLEDKAMNQIE IHQTAISNRTL  K     + P+   IEPQFPLADECS
Subjt:  ILLNSELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIKETVPVKCPLFY-IEPQFPLADECS

Query:  KIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
         I+TQLSPRLTNLVKSGFVPDS IDDCGNSSRQRIYEF IP+FILPVQVDGE LLKSPS GTSERINCNGGSC GDD+FLSTGEV+PSLLK  D
Subjt:  KIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

A0A6J1FFK2 DEAD-box ATP-dependent RNA helicase FANCM isoform X8

1.39e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

A0A6J1FGU4 DEAD-box ATP-dependent RNA helicase FANCM isoform X6

1.67e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

A0A6J1FLC0 DEAD-box ATP-dependent RNA helicase FANCM isoform X5

1.86e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

A0A6J1FMD9 DEAD-box ATP-dependent RNA helicase FANCM isoform X7

1.57e-64

64.1

Show/hide

Query:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC
        ILL+S ELGS  VRTA+DLIV T+ V+EPTTSQ       +L SPETD   VLEDKA+NQIEKIHQ+ +  RT   + +    K  +  IEPQFP ADEC
Subjt:  ILLNS-ELGSCSVRTARDLIVPTKVVNEPTTSQ-------ILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIK-ETVPVKCPLFYIEPQFPLADEC

Query:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        S I+TQLSPRLTNL++SGFVPDS ID+CG S RQRIYE AI QFILPVQVDGE LLKS SPG ++RINCN GS  G+D+FL++GE RPS+L+  D
Subjt:  SKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

SwissProt top hits

e value

%identity

Alignment

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM

7.7e-07

32.65

Show/hide

Query:  DECSKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        D+C  +  +LSPRLTN +KSG VP+S + D G ++R+   EF  PQ   P++   E   +S  P    +  CN  +       L T +    L  G +
Subjt:  DECSKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

Arabidopsis top hits

e value

%identity

Alignment

AT1G35530.1 DEAD/DEAH box RNA helicase family protein

5.5e-08

32.65

Show/hide

Query:  DECSKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        D+C  +  +LSPRLTN +KSG VP+S + D G ++R+   EF  PQ   P++   E   +S  P    +  CN  +       L T +    L  G +
Subjt:  DECSKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

AT1G35530.2 DEAD/DEAH box RNA helicase family protein

5.5e-08

32.65

Show/hide

Query:  DECSKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD
        D+C  +  +LSPRLTN +KSG VP+S + D G ++R+   EF  PQ   P++   E   +S  P    +  CN  +       L T +    L  G +
Subjt:  DECSKIKTQLSPRLTNLVKSGFVPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

Sequences

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CDS sequence

Show/hide CDS sequence

ATATTGTTGAATTCTGAGCTAGGTTCTTGCAGCGTAAGAACCGCTCGGGACTTGATCGTGCCAACTAAAGTTGTCAATGAACCAACAACTTCTCAGATTCTGTCAAGCCC
TGAAACAGATGGTGTGAATGTCTTGGAAGACAAAGCAATGAATCAGATTGAGAAAATTCATCAAACTGCTATCTCGAACAGAACTTTATTAATAAAGGAGACAGTGCCAG
TAAAATGCCCATTGTTTTATATTGAGCCACAATTCCCACTAGCTGATGAATGCAGCAAAATCAAGACGCAGCTTAGTCCTCGTCTCACTAATCTTGTCAAGAGTGGTTTT
GTTCCAGATTCAACCATTGATGATTGTGGAAATTCAAGCAGACAAAGGATATATGAATTTGCAATACCACAGTTTATCTTGCCTGTCCAAGTGGATGGTGAAAATCTTTT
AAAATCTCCAAGCCCTGGGACAAGTGAAAGAATTAATTGCAATGGGGGCTCCTGCACTGGAGATGACCTTTTTCTCTCCACTGGAGAAGTTCGACCTTCTCTACTTAAGG
GGAAAGAT

mRNA sequence

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Protein sequence

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ILLNSELGSCSVRTARDLIVPTKVVNEPTTSQILSSPETDGVNVLEDKAMNQIEKIHQTAISNRTLLIKETVPVKCPLFYIEPQFPLADECSKIKTQLSPRLTNLVKSGF
VPDSTIDDCGNSSRQRIYEFAIPQFILPVQVDGENLLKSPSPGTSERINCNGGSCTGDDLFLSTGEVRPSLLKGKD

MC08g1464 (gene) of Bitter gourd (Dali-11) v1 genome