CuGenDBv2

Gene ID	MC08g1523
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	endoribonuclease Dicer homolog 2-like
Genome location	MC08:21333046..21333317
RNA-Seq Expression	MC08g1523
Synteny	MC08g1523
Gene Ontology terms	GO:0010216 - maintenance of DNA methylation (biological process) GO:0010267 - production of ta-siRNAs involved in RNA interference (biological process) GO:0051214 - RNA virus induced gene silencing (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0004525 - ribonuclease III activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR000999 - Ribonuclease III domain IPR036389 - Ribonuclease III, endonuclease domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022149983.1 LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2 [Momordica charantia]

6.59e-36

78.65

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYVITVHLYYK+PGMSP  LTDMR AAVSN+CYAR AVK ELHKSILHL +E+HRH   IN TLK FE+LSSE T GWE ETSFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

XP_022960647.1 endoribonuclease Dicer homolog 2 isoform X2 [Cucurbita moschata]

5.38e-32

71.91

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYV+TVHLY KYPGMSP  LTDMR A+VSN+CYARTAVK +L+KSILHL +++HRH   I+ TL+ FEM SSEAT GWE ETS PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

XP_038879364.1 endoribonuclease Dicer homolog 2 isoform X1 [Benincasa hispida]

1.14e-32

73.03

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYVITVHLY KYPGM+P  LTDMR A+VSN+CYARTAVK +LHKSILH  +++H+H   I+ TL  FEMLSSEAT GWE ETSFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

XP_038879366.1 endoribonuclease Dicer homolog 2 isoform X2 [Benincasa hispida]

1.14e-32

73.03

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYVITVHLY KYPGM+P  LTDMR A+VSN+CYARTAVK +LHKSILH  +++H+H   I+ TL  FEMLSSEAT GWE ETSFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

XP_038879367.1 endoribonuclease Dicer homolog 2 isoform X3 [Benincasa hispida]

1.14e-32

73.03

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYVITVHLY KYPGM+P  LTDMR A+VSN+CYARTAVK +LHKSILH  +++H+H   I+ TL  FEMLSSEAT GWE ETSFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D882 LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2

3.19e-36

78.65

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYVITVHLYYK+PGMSP  LTDMR AAVSN+CYAR AVK ELHKSILHL +E+HRH   IN TLK FE+LSSE T GWE ETSFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

A0A6J1H806 endoribonuclease Dicer homolog 2 isoform X2

2.61e-32

71.91

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYV+TVHLY KYPGMSP  LTDMR A+VSN+CYARTAVK +L+KSILHL +++HRH   I+ TL+ FEM SSEAT GWE ETS PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

A0A6J1H869 endoribonuclease Dicer homolog 2 isoform X1

2.61e-32

71.91

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYV+TVHLY KYPGMSP  LTDMR A+VSN+CYARTAVK +L+KSILHL +++HRH   I+ TL+ FEM SSEAT GWE ETS PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

A0A6J1JAF3 endoribonuclease Dicer homolog 2 isoform X2

3.56e-32

70.79

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYV+TVHL+ KYPGMSP  LTDMR A+V+N+CYARTAVK +L+KSILHL +++H+H   I+ TLK FEMLSSEAT GWE ETS PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

A0A6J1JJI4 endoribonuclease Dicer homolog 2 isoform X3

3.56e-32

70.79

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDYV+TVHL+ KYPGMSP  LTDMR A+V+N+CYARTAVK +L+KSILHL +++H+H   I+ TLK FEMLSSEAT GWE ETS PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

SwissProt top hits

e value

%identity

Alignment

Q10HL3 Endoribonuclease Dicer homolog 2a

1.7e-12

42.7

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        +LD++ T + Y KYP  +P  LTD+R A+V+NNCYA  AVK  L+K ILH   E+HR    +++ L+ F    +  + GWE     PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

Q3EBC8 Endoribonuclease Dicer homolog 2

2.9e-20

55.06

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDY+IT HLY KYP +SP  LTDMR A+V+N CYA  AVK  LHK IL+  + +H+H   I+ T+  FE  S ++T GWE + SFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

Q69LX2 Endoribonuclease Dicer homolog 2b

5.5e-11

40.45

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        +LD++ T + Y KYP  +P  LTD+R A+V+NNCYA  AVK  L+K ILH   E+HR ++             +  + GWE     PKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

Q8LMR2 Endoribonuclease Dicer homolog 1

1.8e-06

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH
        VLD++IT HL++ Y  + P  LTD+R AAV+N  +AR AVK +LH  + H
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH

Q9SP32 Endoribonuclease Dicer homolog 1

1.8e-06

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH
        VLD++IT HL++ Y  + P  LTD+R AAV+N  +AR AVK +LH  + H
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH

Arabidopsis top hits

e value

%identity

Alignment

AT1G01040.1 dicer-like 1

1.3e-07

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH
        VLD++IT HL++ Y  + P  LTD+R AAV+N  +AR AVK +LH  + H
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH

AT1G01040.2 dicer-like 1

1.3e-07

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH
        VLD++IT HL++ Y  + P  LTD+R AAV+N  +AR AVK +LH  + H
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILH

AT3G03300.1 dicer-like 2

2.1e-21

55.06

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDY+IT HLY KYP +SP  LTDMR A+V+N CYA  AVK  LHK IL+  + +H+H   I+ T+  FE  S ++T GWE + SFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

AT3G03300.2 dicer-like 2

2.1e-21

55.06

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDY+IT HLY KYP +SP  LTDMR A+V+N CYA  AVK  LHK IL+  + +H+H   I+ T+  FE  S ++T GWE + SFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

AT3G03300.3 dicer-like 2

2.1e-21

55.06

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Query:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV
        VLDY+IT HLY KYP +SP  LTDMR A+V+N CYA  AVK  LHK IL+  + +H+H   I+ T+  FE  S ++T GWE + SFPKV
Subjt:  VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

Sequences

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CDS sequence

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GTATTAGATTATGTCATCACTGTGCATTTGTACTACAAATATCCTGGGATGTCACCAAGAACGTTGACTGACATGAGGCCTGCAGCAGTGAGCAATAATTGCTATGCTCG
AACTGCAGTAAAGGTTGAGTTACACAAAAGTATCCTACATTTGTTTTATGAGGTCCATAGACATATTAATATCATTAATCATACCCTTAAAATTTTTGAGATGTTGTCTT
CAGAAGCGACGTTGGGATGGGAGCCTGAGACTTCTTTTCCTAAGGTT

mRNA sequence

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Protein sequence

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VLDYVITVHLYYKYPGMSPRTLTDMRPAAVSNNCYARTAVKVELHKSILHLFYEVHRHINIINHTLKIFEMLSSEATLGWEPETSFPKV

MC08g1523 (gene) of Bitter gourd (Dali-11) v1 genome