; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC08g1805 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1805
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionexosome complex exonuclease RRP44 homolog A-like
Genome locationMC08:26194188..26198037
RNA-Seq ExpressionMC08g1805
SyntenyMC08g1805
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000178 - exosome (RNase complex) (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0004540 - ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135948.1 exosome complex exonuclease RRP44 homolog A [Momordica charantia]5.19e-5563.64Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLSVVLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVATQWYQKHLGGATRVL+V NDRENKRKAIEEGIYAET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

XP_022143443.1 exosome complex exonuclease RRP44 homolog A-like [Momordica charantia]1.22e-7993.28Show/hide
Query:  MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLG
        MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE+        IRVATQWYQKHLG
Subjt:  MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLG

Query:  GATRVLVVINDRENKRKAIEEGIYAETKTDLGLD
        GATRVLVVINDRENKRKAIEEGIYAETKTDLGLD
Subjt:  GATRVLVVINDRENKRKAIEEGIYAETKTDLGLD

XP_022952404.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata]2.75e-5159.09Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVA QWYQ H+GGATRVL++ NDREN+RKA+EEGI AET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

XP_022972336.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima]2.75e-5159.09Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVA QWYQ H+GGATRVL++ NDREN+RKA+EEGI AET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

XP_023554295.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo]2.75e-5159.09Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVA QWYQ H+GGATRVL++ NDREN+RKA+EEGI AET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

TrEMBL top hitse value%identityAlignment
A0A0A0K821 Uncharacterized protein2.29e-5059.09Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LEN AIDDVVMLSVVLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTY+K+MSGE+        IRVA QWYQ HLGGATRVL++ NDREN+RKAIEEGI AET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

A0A6J1C6A0 exosome complex exonuclease RRP44 homolog A2.51e-5563.64Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLSVVLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVATQWYQKHLGGATRVL+V NDRENKRKAIEEGIYAET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

A0A6J1CQQ6 exosome complex exonuclease RRP44 homolog A-like5.92e-8093.28Show/hide
Query:  MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLG
        MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE+        IRVATQWYQKHLG
Subjt:  MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLG

Query:  GATRVLVVINDRENKRKAIEEGIYAETKTDLGLD
        GATRVLVVINDRENKRKAIEEGIYAETKTDLGLD
Subjt:  GATRVLVVINDRENKRKAIEEGIYAETKTDLGLD

A0A6J1GLL6 exosome complex exonuclease RRP44 homolog A-like1.33e-5159.09Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVA QWYQ H+GGATRVL++ NDREN+RKA+EEGI AET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

A0A6J1I5P7 exosome complex exonuclease RRP44 homolog A-like1.33e-5159.09Show/hide
Query:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL
        MLHNKSFVKKTKS KVMK                                                 LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRAL
Subjt:  MLHNKSFVKKTKSVKVMK-------------------------------------------------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRAL

Query:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET
        CSNPLRRFFVFSN+HHKDTYVKEMSGE+        IRVA QWYQ H+GGATRVL++ NDREN+RKA+EEGI AET
Subjt:  CSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET

SwissProt top hitse value%identityAlignment
P37202 Exosome complex exonuclease dis31.8e-1235.85Show/hide
Query:  DVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGG-ATRVLVVINDRENKRKAIEEGIY
        DV++L  V  EI +K++ +YNR++ LC    +RF  FSN+   DT+V+ +  E+        IR A  W+  HL     +++++ +DREN R A E+GI 
Subjt:  DVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGG-ATRVLVVINDRENKRKAIEEGIY

Query:  AETKTD
          T  D
Subjt:  AETKTD

Q08162 Exosome complex exonuclease DIS33.5e-1139.25Show/hide
Query:  LENP-AIDDVVMLSVVLDEIKNKNLSIYNRVRALC--SNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGG-ATRVLVVINDREN
        LENP    DV++  +VLDE++NK+  +Y R+R LC  S+  +RF VF N+  + T+V+ +  ET        IR   QWY +HL      V++V NDR N
Subjt:  LENP-AIDDVVMLSVVLDEIKNKNLSIYNRVRALC--SNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGG-ATRVLVVINDREN

Query:  KRKAIEE
        +  A +E
Subjt:  KRKAIEE

Q9CSH3 Exosome complex exonuclease RRP442.0e-1940.35Show/hide
Query:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE--------TIRVATQWYQKHL-----GGATRVLVVINDRE
        LE+PAI +V++L  V+ E++N++  IY R+R + +N  + F+ F+N+HHK+TY+++  GE         IRVA +WY +HL         +V+++ NDR+
Subjt:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE--------TIRVATQWYQKHL-----GGATRVLVVINDRE

Query:  NKRKAIEEGIYAET
        NK KA++EGI A T
Subjt:  NKRKAIEEGIYAET

Q9SHL7 Exosome complex exonuclease RRP44 homolog A2.5e-3366.97Show/hide
Query:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKA
        LEN AID VV+LSVVLDE+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  E+        IRVAT WYQKHLG  ++VL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
         EEGI AET
Subjt:  IEEGIYAET

Q9Y2L1 Exosome complex exonuclease RRP442.0e-1942.11Show/hide
Query:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE--------TIRVATQWYQKHL-----GGATRVLVVINDRE
        LE+PAI +V++L  VL E++N++  +Y R+R + +N  + F+ F+N+HH++TYV++  GE         IRVA +WY +HL         +V+ + NDR 
Subjt:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE--------TIRVATQWYQKHL-----GGATRVLVVINDRE

Query:  NKRKAIEEGIYAET
        NK KAIEEGI A T
Subjt:  NKRKAIEEGIYAET

Arabidopsis top hitse value%identityAlignment
AT2G17510.1 ribonuclease II family protein1.8e-3466.97Show/hide
Query:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKA
        LEN AID VV+LSVVLDE+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  E+        IRVAT WYQKHLG  ++VL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
         EEGI AET
Subjt:  IEEGIYAET

AT2G17510.2 ribonuclease II family protein1.8e-3466.97Show/hide
Query:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKA
        LEN AID VV+LSVVLDE+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  E+        IRVAT WYQKHLG  ++VL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
         EEGI AET
Subjt:  IEEGIYAET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATAACAAGTCGTTTGTGAAAAAAACGAAGTCTGTGAAGGTGATGAAGCTTGAGAATCCGGCTATTGATGACGTGGTTATGCTATCAGTTGTGCTGGACGAGAT
TAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCCACTGAGGAGATTCTTTGTCTTCTCCAACAAGCATCACAAGGATACATATGTTAAGG
AGATGAGTGGAGAAACAATTCGTGTGGCTACTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCGTGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCT
ATTGAAGAGGGAATTTATGCAGAGACAAAGACAGATTTGGGGTTGGATTAA
mRNA sequenceShow/hide mRNA sequence
GTTTAATGTCTTGAGTACATTATTTTGGTTTATTATTTCTTTTGGTAAAAAAAGAAAAGAAAGGAAAACGAAAAGGGAAAAAGAAAAAAAAATTAAAAGAAACCAAAACC
CTACCTTCCCTTTCTCCTTCTTCTTCTCTCCCTCCCTCTTGTTGCAGCCGCCCAGCCCACCACTTTTCCCACAGCATCCGAACGACGTTTCTCCTCCCTCGGATTGCGAC
GCACAACCCTTGTTACGATTTGAATAAACCCCACTCCAAGTTCAAAAAGCAAGCTCATCGCACAATTCAAGGAAGCAGCTACAAGTATTTCTGGCTGCTTATTTGCAAGC
CTCACTGTTTACAAATTTGATTTTCAGCTTTCAGTGTGTAGTGGAGTTTATCAAGTAGGCCCTGAGGTCCTTCATCTTAACGAAGGGGGTAGTTCAGATATAGGGTTCTG
CGAGTAGCACGGAAAATAAGAGTTGAAGCTGCTGTCAGTAAACATGTTGCATAACAAGTCGTTTGTGAAAAAAACGAAGTCTGTGAAGGTGATGAAGCTTGAGAATCCGG
CTATTGATGACGTGGTTATGCTATCAGTTGTGCTGGACGAGATTAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCCACTGAGGAGATTC
TTTGTCTTCTCCAACAAGCATCACAAGGATACATATGTTAAGGAGATGAGTGGAGAAACAATTCGTGTGGCTACTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCG
TGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTATGCAGAGACAAAGACAGATTTGGGGTTGGATTAATTCCAAGACTTCTACC
ACTAGGAGAGATATGCGTGGAGTTGTAAGAGCTGAAATGTTTGGTCAGTTGACAAGTGGCCTGGAGAGTGCTTAAAACAAGCTCAAAGAAGAAGGTTTGACTCTTCTCAA
GTTCAGAGAGAGAGAGTTGTGAATGATCCATTTGGCGCTTTATCTAACTGGAATGATCACAAAGAAGATATTAATCCATGTTTTTGGTTAGGAGTTGAATGCTCGTATAG
GAAAGTTGTAGTCCTGTATGTTCTTCACCTTTTTCATCTTCCTTTCTCCTGTTTTTGATTGTTGGGCCATTTTTTGTTGGGTTAGTAGTTACTTGGTATAGTTTGTTTAT
GTACAGGGTTGAGAAAAACCTTCGTTGATGTATATATAATTTACTATATGTATACACTTTAAATTTGTAGGTGGGTTGGTGTACTAATGGATATATATGTTTTTGTATGT
AAAATATGTCACAATTGACAGGTACAGGTACAACTATGGAAAGCGGTTTTTAATTACATTTATAAATGTCAACAAAATAGGTT
Protein sequenceShow/hide protein sequence
MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGETIRVATQWYQKHLGGATRVLVVINDRENKRKA
IEEGIYAETKTDLGLD