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MC08g1816 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1816
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationMC08:26343709..26349167
RNA-Seq ExpressionMC08g1816
SyntenyMC08g1816
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]3.96e-8399.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]6.83e-84100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]3.26e-8297.41Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_031282363.1 transcription elongation factor SPT4 homolog 2 [Pistacia vera]1.33e-8195.69Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCE+ER+QY PPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]1.61e-8298.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog1.92e-8399.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A1S3CFH1 Transcription elongation factor SPT4 homolog1.92e-8399.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1CNB4 Transcription elongation factor SPT4 homolog3.31e-84100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1G8V8 Transcription elongation factor SPT4 homolog1.58e-8297.41Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1K6X8 Transcription elongation factor SPT4 homolog1.58e-8297.41Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A3.2e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q3SYX6 Transcription elongation factor SPT43.2e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q6DGQ0 Transcription elongation factor SPT41.1e-1948.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 12.5e-5681.03Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

Q94C60 Transcription elongation factor SPT4 homolog 26.0e-5885.34Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein1.8e-5781.03Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G08565.2 Transcription initiation Spt4-like protein5.4e-4668.97Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.1 SPT4 homolog 24.2e-5985.34Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.2 SPT4 homolog 26.8e-4191.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRI
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCACCCGCTCAAATTCCCACCAGTTTTGGGCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGTCCCTTCTTCAAGATGGACGAAGATCATGAGCGTGTTGTAGAGTGTACTACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTACCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTTGTCCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCAGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATAT
GCACCACCAAAACGCGTATGA
mRNA sequenceShow/hide mRNA sequence
ATTCCCATTTCTCCTCCTCCTTCGTCCTCAGTCCGTACTCTTCCTTCCCTAGTTTTCTTTCGCCGCCGGTGCTGCCTTACCAACGCCGCCGGCCGGACGTTACTGCCGCC
GACCTTCTTCTGCTCCGCCACGGACGCCGCTTCCCATACATCCAGCACAAGGATTCAGTAGCAGATAGGAAACTAGCTGGGAGAGATCGGAAGTAACAATGGCAAGCGCA
CCCGCTCAAATTCCCACCAGTTTTGGGCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGTCCCTT
CTTCAAGATGGACGAAGATCATGAGCGTGTTGTAGAGTGTACTACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTACCAGAAGTTGGGCTGCTAGATGGCTGC
GAATTGGAAGATTTGTCCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCAGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAA
CGCGTATGACTCTTCAAGCAGATGTTTGGTTGATGAAACAGTTTGATGACTTGAAAGAATGAGATTGATGAGAATGGTAAATGGGTGATAATGTTTTGAAAGAAGGCTCT
TATTACAAATAAGTTTGAAATGAAAAGATATTTACATAAGAGACCCATCTGTTTTGAGTTAGGGCACATTAAAAAAAAAAAAAACTAGTTTGGATTATTGGTATTACTAA
TTTTTCTCTCATGTTTGTGCCTGCAAGTGTCAAAAAAGACCAGTTTGGTCTCTATTATGATTAATAAGTTATGAATTTTTAAAAAATATCAAATAAGTCTTTAGACTTAT
GATCATGTGTTTAGTAGGTTCTTAAACTTCAAG
Protein sequenceShow/hide protein sequence
MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY
APPKRV