; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC08g1865 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1865
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationMC08:26909029..26911979
RNA-Seq ExpressionMC08g1865
SyntenyMC08g1865
Gene Ontology termsNA
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155027.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1 [Momordica charantia]2.02e-85100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELK
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELK
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELK

Query:  YGSHNDYIFRGSPLLYSAPKDSSNLTKLGA
        YGSHNDYIFRGSPLLYSAPKDSSNLTKLGA
Subjt:  YGSHNDYIFRGSPLLYSAPKDSSNLTKLGA
XP_022155028.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X2 [Momordica charantia]1.56e-54100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
XP_022155029.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X3 [Momordica charantia]1.42e-54100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
XP_022155030.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X4 [Momordica charantia]9.72e-55100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]4.72e-4891.21Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MA KEEQ PNRDELA SLNEFFTSVS+MIKSDLLGSSNQLALLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI QIE IEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein6.54e-4889.01Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MA KEE+LPNRD+LA SLNEFFTSVS+MIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI+QIE IEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
A0A6J1DL99 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X44.71e-55100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
A0A6J1DLV8 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X27.58e-55100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
A0A6J1DN97 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X19.77e-86100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELK
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELK
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELK

Query:  YGSHNDYIFRGSPLLYSAPKDSSNLTKLGA
        YGSHNDYIFRGSPLLYSAPKDSSNLTKLGA
Subjt:  YGSHNDYIFRGSPLLYSAPKDSSNLTKLGA
A0A6J1DP01 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X36.89e-55100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 21.7e-2162.2Show/hide
Query:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        +RD+LA SL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG D ++ Q++ IE Q
Subjt:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 26.6e-0534.15Show/hide
Query:  LPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIE
        LP  ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF+  LK K   F  Y  +I  ++
Subjt:  LPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIE
Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.1.2e-2262.2Show/hide
Query:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        +RD+LA SL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG D ++ Q++ IE Q
Subjt:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGGAAAGAGGAACAATTGCCCAACAGGGACGAGCTCGCCGTCTCGCTCAACGAATTCTTCACCAGCGTATCCCAAATGATCAAATCGGACCTTCTTGGATCAAG
TAATCAGCTGGCACTTTTGGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGGGACGTGGCTTCTGGAATGAGGGTTTTCGTGGAGCAACTGAAGTCGA
AGAGTGGTGGCTTTGATGCTTATATTAGCCAGATTGAGAATATAGAACATCAGCACGCTGTTTATCCGATAGAGCTCAAGTATGGATCACACAATGACTACATTTTTCGA
GGCTCACCACTTCTTTATTCGGCACCTAAAGATTCTTCCAACTTGACTAAGTTAGGGGCATGA
mRNA sequenceShow/hide mRNA sequence
TGCCTTCCCATTTATTAGCATCGAGAGAGACGATGTCGAAATGTAGTCCGTGATACTGTCCACCCATTTAAAATCAAATTGAAATAAAAAACATGAAATATTTAAATTGA
AATATTTTTAACCTAGTCTAAATTAAGAGAACAAATCATATTAAAATATATTTCTATTGAACTAACAAAAATCAATAATAATAAATCGAGAAAACAAAGTCATAGACAAA
ATTGCCCATTATATTTAGCCTAAAGTAATTAATTTTGATTTTCACCAACGGTTTCCCCTTGGTTTTTCTTGTTCACTGTTATCTATCATTTAGCCGCTCGGGATTTTCAG
TATCAGCTCTCCTTGAATCACCATACGAACGAATCGAGTTCCGTGTTCCGGCGAGGCGACGGCGCGTGATCATAATTCCAGGAAGCTTTCGTGGCTTCAGGTTCCATCCT
TTGTAAGTGTCGCCGTTTGTGATCTTATTCCATGGCCGGGAAAGAGGAACAATTGCCCAACAGGGACGAGCTCGCCGTCTCGCTCAACGAATTCTTCACCAGCGTATCCC
AAATGATCAAATCGGACCTTCTTGGATCAAGTAATCAGCTGGCACTTTTGGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGGGACGTGGCTTCTGGA
ATGAGGGTTTTCGTGGAGCAACTGAAGTCGAAGAGTGGTGGCTTTGATGCTTATATTAGCCAGATTGAGAATATAGAACATCAGCACGCTGTTTATCCGATAGAGCTCAA
GTATGGATCACACAATGACTACATTTTTCGAGGCTCACCACTTCTTTATTCGGCACCTAAAGATTCTTCCAACTTGACTAAGTTAGGGGCATGACTCTAATACAACTTAG
AGACAACAAAATCTTCCATGTTTCTACAATTGTATGATATTGTCCACTTTATGTATAATCTCTCATGACTTTGTTTTTGGTTTCATCGAAAATGTCTCGTACCAATGAAG
ATGTTGTTCCTCACTCATATAGGCCTATGATCTTCTCCTTGTCTGGCCAACGTGGACTTTGATCGCCCCCCAACAAATCATTGTTTCAATTTTTTAGAATAGAGGAGGTG
GATTACAAGTTCTAATTGCTTTCATCTTTTAAATTGAACAGTATGGGTTATCAGGATTTTCATTTGCAAGTTGCTCTTAGTTATTTGCGGTGATTCCTTCATTTTTTGGC
CAATTTTTAGTCCG
Protein sequenceShow/hide protein sequence
MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQHAVYPIELKYGSHNDYIFR
GSPLLYSAPKDSSNLTKLGA