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MC08g1869 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g1869
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationMC08:26959652..26959980
RNA-Seq ExpressionMC08g1869
SyntenyMC08g1869
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009752275.1 RNA polymerase subunit alpha [Trichosanthes baviensis]1.60e-2869.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

YP_009752444.1 RNA polymerase subunit alpha [Trichosanthes tricuspidata]1.60e-2869.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

YP_009752528.1 RNA polymerase subunit alpha [Trichosanthes tubiflora]1.60e-2869.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

YP_009752952.1 RNA polymerase subunit alpha [Momordica sessilifolia]1.60e-2869.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

YP_009753821.1 RNA polymerase subunit alpha [Trichosanthes pilosa]1.60e-2869.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

TrEMBL top hitse value%identityAlignment
A0A6H0EQW3 DNA-directed RNA polymerase subunit alpha7.73e-2969.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

A0A6H0ERT0 DNA-directed RNA polymerase subunit alpha7.73e-2969.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

A0A6H0ES34 DNA-directed RNA polymerase subunit alpha7.73e-2969.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

A0A6H0ET94 DNA-directed RNA polymerase subunit alpha7.73e-2969.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

A0A6H0EV18 DNA-directed RNA polymerase subunit alpha7.73e-2969.41Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE FHLKNNK+KVTLP     L  FH    K R+KKKEIALKYIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

SwissProt top hitse value%identityAlignment
A4QJE7 DNA-directed RNA polymerase subunit alpha1.9e-2160Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NG+LTPK+ LH  S NL ++FI FLHVEEE F+L+NN+ KVTLP  P     FH    K R+KKKE+  +YIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

A4QKW3 DNA-directed RNA polymerase subunit alpha1.1e-2161.18Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL ++FI FLHVEEE F+L+NN+ +VTLPF P     FH      R+KKKE+A +YIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

A4QL51 DNA-directed RNA polymerase subunit alpha6.6e-2261.18Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL ++FI FLHVEEE FHL+NN+ +VTLP  P     FH      R+KKKE+A +YIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

Q2L938 DNA-directed RNA polymerase subunit alpha3.9e-2263.53Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEE  HL+NN+  VTLPF P     FH    K  +KKKEIALKYIFID+ E
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

Q4VZK3 DNA-directed RNA polymerase subunit alpha7.0e-2468.97Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEK--FHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL D+FI FLH EEEK  FHLKNNKKKVTLP     L  FH    K R+KKKEIALKYIFID+ E
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEK--FHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE

Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha1.4e-2261.18Show/hide
Query:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE
        LFLEIW NGSLTPK+ LH  S NL ++FI FLHVEEE F+L+NN+ +VTLPF P +  L +  KKK   K KE+A +YIFID+LE
Subjt:  LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTATTTCTCGAAATATGGATTAATGGAAGTTTAACTCCTAAAAAAGTACTTCATGGAACCTCTCCCAATTTGACTGATATATTTATTACTTTTTTACATGTGGAAGAAGA
AAAGTTCCATTTAAAAAACAATAAAAAAAAAGTTACTTTACCCTTTTTACCGATATATTTATTACTTTTTCACACGTGGAAGAAGAAAAAAAGAAGAAAAAAAAAAGAAA
TAGCATTGAAATATATTTTTATTGACCGATTAGAA
mRNA sequenceShow/hide mRNA sequence
TTATTTCTCGAAATATGGATTAATGGAAGTTTAACTCCTAAAAAAGTACTTCATGGAACCTCTCCCAATTTGACTGATATATTTATTACTTTTTTACATGTGGAAGAAGA
AAAGTTCCATTTAAAAAACAATAAAAAAAAAGTTACTTTACCCTTTTTACCGATATATTTATTACTTTTTCACACGTGGAAGAAGAAAAAAAGAAGAAAAAAAAAAGAAA
TAGCATTGAAATATATTTTTATTGACCGATTAGAA
Protein sequenceShow/hide protein sequence
LFLEIWINGSLTPKKVLHGTSPNLTDIFITFLHVEEEKFHLKNNKKKVTLPFLPIYLLLFHTWKKKKRRKKKEIALKYIFIDRLE