CuGenDBv2

Gene ID	MC08g1993
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	INO80 complex subunit C
Genome location	MC08:28293690..28302295
RNA-Seq Expression	MC08g1993
Synteny	MC08g1993
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0031011 - Ino80 complex (cellular component)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152811.1 INO80 complex subunit C isoform X2 [Cucumis sativus]

2.14e-84

95.16

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]

1.51e-84

95.16

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+N+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

3.29e-88

100

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAVILR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]

9.07e-86

96.77

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

1.29e-85

95.97

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

1.04e-84

95.16

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A1S3B479 INO80 complex subunit C isoform X1

7.30e-85

95.16

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+N+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1CRZ9 INO80 complex subunit C isoform X1

1.59e-88

100

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAVILR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1FBP9 INO80 complex subunit C isoform X1

4.39e-86

96.77

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1HLV4 INO80 complex subunit C isoform X1

4.39e-86

96.77

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

1.0e-07

35.82

Show/hide

Query:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK-VIRSLPNEYVQRYLAMRNAAVILR
        Y ++E+PPS+ P KK CD+TG +  Y  P   +RY NA++++ +++ +     Q YL +R A  +L+
Subjt:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK-VIRSLPNEYVQRYLAMRNAAVILR

Q5BJY3 INO80 complex subunit C

3.3e-14

42.86

Show/hide

Query:  RGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL AE       ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  I+
Subjt:  RGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL

Q6PI98 INO80 complex subunit C

3.3e-14

42.86

Show/hide

Query:  RGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL +E       ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  I+
Subjt:  RGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL

Q8BHA0 INO80 complex subunit C

8.7e-15

45.05

Show/hide

Query:  RGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL AE       ++PNY +I++PPS  P KK  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  I+
Subjt:  RGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL

Q9UTE8 Chromatin-remodeling complex subunit ies6

2.1e-13

40.21

Show/hide

Query:  PKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVILR
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  K CD+TG  A Y DP+T LRY N +++ +IR LP+   Q YL +R++ V+L+
Subjt:  PKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVILR

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

2.4e-04

35.62

Show/hide

Query:  KQILQAENYHNHSPDEPNYVNIESPPSM----------HPCKKICDITGYEAPYYDPRTTLRYANADVFKVIR
        K + +      HS D  NY+   +  S           +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  KQILQAENYHNHSPDEPNYVNIESPPSM----------HPCKKICDITGYEAPYYDPRTTLRYANADVFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

2.0e-43

64.52

Show/hide

Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK
        ME E++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P YVNIESPPS  PCK++CDITGYEAPY DPRT LRYANA VF+
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
         +RSL ++ V +YL++RNAAV+L+
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGCCAGAGGTGATAGAAGCAGAGTTAGTGTTGCCAACCCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTACCCAAAAGGCCAATCCAGAGGCAGGCACTG
GAAACATCTGAAGCAAATTCTTCAAGCCGAAAACTATCACAACCACTCCCCTGACGAACCCAACTACGTTAATATTGAATCACCTCCCTCAATGCATCCATGCAAGAAGA
TTTGCGATATAACTGGATATGAGGCACCATACTACGATCCGAGGACTACTCTTCGATATGCAAATGCTGATGTCTTCAAGGTCATAAGGTCTCTTCCTAATGAGTACGTT
CAGAGATATTTAGCCATGAGAAATGCAGCTGTAATTTTAAGGTGA

mRNA sequence

Show/hide mRNA sequence

CTAACCCAAACTATGGGATAATATTTGTGGTTTATTATTATTTTTTTAAATTTTTTATAATCAACTGTCGAGGACATTAATCATCCTTTTGGAAGTTTAGTTTTAATATT
CATTAAATTCCATTAAACTAAAACAAACTCCTGAATATCATACTTAAGGAAAAAAAAAACCTGAATATCTTTACCCGCTAAATAGAATCGGAGATTGCTTTTCTCCAGTT
CTCTCACGGTCCCCCTGTTTATTGCAAGCCGGAGATTTTTCAGCATTATTAGGGTTTCTTCTTCTGTAGTGTTCAGCTTCGTTAAATTCATTGAACCGTTGAATGTCAAT
TTTTTTAGAAATCAGAAGGCATTTCAGTAGGTACTAGCAAAAGTTGAAGATGGAGCCAGAGGTGATAGAAGCAGAGTTAGTGTTGCCAACCCACCTGAATTTCAAGCGAA
TTCAAATGTACGAGAAGTACCCAAAAGGCCAATCCAGAGGCAGGCACTGGAAACATCTGAAGCAAATTCTTCAAGCCGAAAACTATCACAACCACTCCCCTGACGAACCC
AACTACGTTAATATTGAATCACCTCCCTCAATGCATCCATGCAAGAAGATTTGCGATATAACTGGATATGAGGCACCATACTACGATCCGAGGACTACTCTTCGATATGC
AAATGCTGATGTCTTCAAGGTCATAAGGTCTCTTCCTAATGAGTACGTTCAGAGATATTTAGCCATGAGAAATGCAGCTGTAATTTTAAGGTGAAGATGTACTACATTTC
TGCTGTTCATTTGCTCGGTGTCTCCTACATTCTTGGGAACGTGCAATGAATATGAACCGATGGCAATAAGCTTTCCATCTCGTTGAAAATGCAGTGTGAAACCTGTTATG
CATGCTTAAGATGTATTATATGTATATTTACTCGATTTCTTTTTTGTGTATAGGATCGTTATGGCGATTTATATTCACCTTGGAACCTATTAGCTGTAGTTGATTCAGTT
GGTCAAAACTTGCTTGCAAAAAACCTTGATGGAATAGTATGGAACAGAATCAAACGTCTAAAACTATTTTGATGCCTAAACATTCAT

Protein sequence

Show/hide protein sequence

MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYV
QRYLAMRNAAVILR

MC08g1993 (gene) of Bitter gourd (Dali-11) v1 genome