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MC08g2080 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g2080
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description60S acidic ribosomal protein P3
Genome locationMC08:29579199..29580563
RNA-Seq ExpressionMC08g2080
SyntenyMC08g2080
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044252 - 60S acidic ribosomal protein P3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW80893.1 hypothetical protein EUGRSUZ_C02261 [Eucalyptus grandis]5.24e-5684.3Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEA-P
        MGVFTFVCRSSG EWTAKQ SGDLE  AAST+ELQRKLVQ+A+A DSSGGVQSSFS ++P+SAVFQVIIGGGGGGGFI GGGAAAAAP+GGAAPAAEA P
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEA-P

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

XP_008451467.1 PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]1.83e-5686.07Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP
        MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI GG  AAAAP+GG APAA EAP
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

XP_022153281.1 60S acidic ribosomal protein P3-2 [Momordica charantia]2.09e-71100Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLFD
        EKKEEEKEESDDDLGLSLFD
Subjt:  EKKEEEKEESDDDLGLSLFD

XP_034679771.1 60S acidic ribosomal protein P3 [Vitis riparia]1.33e-5680.99Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAP-
        MGVFTFVCRSSG EWTAKQ +GDLE SAASTY+LQRK VQ+AL+ DSSGGVQSSFSY++P+S VFQVI+GGGGGGGF  GGGAAAAAPSGG APAA+AP 
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAP-

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

XP_038889531.1 60S acidic ribosomal protein P3-2 [Benincasa hispida]7.10e-5986.89Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP
        MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI GGG AAAAP+GG APAA EAP
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

TrEMBL top hitse value%identityAlignment
A0A059CSI3 Uncharacterized protein2.54e-5684.3Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEA-P
        MGVFTFVCRSSG EWTAKQ SGDLE  AAST+ELQRKLVQ+A+A DSSGGVQSSFS ++P+SAVFQVIIGGGGGGGFI GGGAAAAAP+GGAAPAAEA P
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEA-P

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

A0A1S3BRK9 60S acidic ribosomal protein P3-28.85e-5786.07Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP
        MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI GG  AAAAP+GG APAA EAP
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

A0A5D3BNN6 60S acidic ribosomal protein P3-28.85e-5786.07Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP
        MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI GG  AAAAP+GG APAA EAP
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

A0A6J1DK62 60S acidic ribosomal protein P3-21.01e-71100Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLFD
        EKKEEEKEESDDDLGLSLFD
Subjt:  EKKEEEKEESDDDLGLSLFD

A5BBF0 Uncharacterized protein6.44e-5780.99Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAP-
        MGVFTFVCRSSG EWTAKQ +GDLE SAASTY+LQRK VQ+AL+ DSSGGVQSSFSY++P+S VFQVI+GGGGGGGF  GGGAAAAAPSGG APAA+AP 
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAP-

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

SwissProt top hitse value%identityAlignment
O24413 60S acidic ribosomal protein P36.9e-3368.85Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGG-GGGGGFISGGGAAAAAPSGGAAPAAEAP
        MGV+TFVCR++G EWTAKQ+SG++E SAA+ YELQR+LV  A A DS  GVQSSFS ++P+SAVFQVI+G  GGG   +SGGG   AA SGGA  AAEAP
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGG-GGGGGFISGGGAAAAAPSGGAAPAAEAP

Query:  -AEKKEEEKEESDDDLGLSLFD
          EKKEEEKEESDDD+G SLFD
Subjt:  -AEKKEEEKEESDDDLGLSLFD

P56724 60S acidic ribosomal protein P32.8e-3472.5Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGV+TFVCRSSG EWTAKQ  G+LE SAA+ YELQR+LV  A A DS+ GVQSSFS +SP+SAVFQVIIG  GGG  I GGGAAA A SGGAA  A    
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLFD
        EKKEEEKEES+DDLG SLFD
Subjt:  EKKEEEKEESDDDLGLSLFD

Q93572 60S acidic ribosomal protein P03.6e-0575.68Show/hide
Query:  AAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD
        AAAAP+  AAPAA APA KKEE KEESDDD+G  LFD
Subjt:  AAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD

Q9LVC9 60S acidic ribosomal protein P3-21.0e-3670.59Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGGAAA    GG A AA    
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLF
        EKK+EE EE + D G  LF
Subjt:  EKKEEEKEESDDDLGLSLF

Q9SVZ6 60S acidic ribosomal protein P3-12.4e-3366.94Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVFTFVC++ G  W+AKQ+ G+LE SA+STYELQRKLVQ +L+ DSSGGVQSSFS +SPTSAVFQVI+GGGGGGGF +GG   AA+  GGA  AA AP 
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  --EKKEEEKEESDDDLGLSLF
          EKK+EE EE + D G  LF
Subjt:  --EKKEEEKEESDDDLGLSLF

Arabidopsis top hitse value%identityAlignment
AT4G00810.1 60S acidic ribosomal protein family2.8e-0556.67Show/hide
Query:  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD
        T  +  V  GGGGGG  +S   AAA A +GGAA AA A  EKK+E  EESD DLG  LFD
Subjt:  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD

AT4G25890.1 60S acidic ribosomal protein family1.7e-3466.94Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVFTFVC++ G  W+AKQ+ G+LE SA+STYELQRKLVQ +L+ DSSGGVQSSFS +SPTSAVFQVI+GGGGGGGF +GG   AA+  GGA  AA AP 
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  --EKKEEEKEESDDDLGLSLF
          EKK+EE EE + D G  LF
Subjt:  --EKKEEEKEESDDDLGLSLF

AT5G57290.1 60S acidic ribosomal protein family7.3e-3870.59Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGGAAA    GG A AA    
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLF
        EKK+EE EE + D G  LF
Subjt:  EKKEEEKEESDDDLGLSLF

AT5G57290.2 60S acidic ribosomal protein family1.5e-3079.27Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGG
        MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGG
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGG

AT5G57290.3 60S acidic ribosomal protein family1.4e-3670.59Show/hide
Query:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA
        MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGGAAA    GG A AA    
Subjt:  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLF
        EKK+EE EE + D G  LF
Subjt:  EKKEEEKEESDDDLGLSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTTCACCTTCGTTTGCCGGAGCTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGAAGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAA
GCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTGGCG
GTGGTGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTTCTGGAGGAGCTGCCCCAGCTGCAGAAGCCCCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGT
GACGATGACCTTGGCCTTTCACTTTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
CGAATATATATAACATCATTTTTAATATTTTAGACAAATTTTAGTTTCCCAAAAGGGCAAGGACTACCAATTGGAACTCAAGAAAACTAACGAGGGTAAAAGAATAATTT
GACATGAAGCAAAACCCTCGATTTGCTCTCTCTCTTGCTAGGGTTTCATCATAAAAACCACACAACCAATCTCTGCACAAGACCCGCCCCACTCTCTCTTCTCTCGCCGA
ATTTCGCTTCAACTAATCTTCTCTCCAATACCAACAATGGGAGTTTTCACCTTCGTTTGCCGGAGCTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGA
AGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAAGCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTT
CCGCCGTTTTCCAGGTGATCATTGGTGGCGGTGGCGGTGGTGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTTCTGGAGGAGCTGCCCCAGCTGCAGAAGCC
CCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGTGACGATGACCTTGGCCTTTCACTTTTTGATTAGTTGGTATAATTACTTGTTATCGTTCTGTCCATTGACATCAT
AATTTTTTAGGAAATTATGCATATGCAAGTACTTGAATTTGCCAGTTCAGTTTCTGTGCTTGTGAAGGACATGAAATTTTGTTACTGATCTTTGTTAAATGGTTGAGAAT
TAGATGTGTTCTTTTG
Protein sequenceShow/hide protein sequence
MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEES
DDDLGLSLFD