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MC08g2353 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC08g2353
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionVQ domain-containing protein
Genome locationMC08:32388418..32388813
RNA-Seq ExpressionMC08g2353
SyntenyMC08g2353
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]1.77e-2949.66Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTD
        M+NL  +LP    H + SQ  N+        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS++   VS D
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTD

Query:  PKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQAS-CVNTY
        P+  YG  SG      ++ +  EG + + EM+G FSGFQAS CVN +
Subjt:  PKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQAS-CVNTY

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]6.10e-2849.29Show/hide
Query:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA--VSTDPKGYYG--
        +LP +  H + SQ  N+A ++   KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS++  VS DPK  YG  
Subjt:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA--VSTDPKGYYG--

Query:  ----LVSGKVGELGEGCFRQDEMQ--GFSGFQAS-CVNTY
            ++  ++ +  EG + + EM+   FSGFQAS CVN +
Subjt:  ----LVSGKVGELGEGCFRQDEMQ--GFSGFQAS-CVNTY

XP_022142960.1 sigma factor binding protein 1, chloroplastic-like [Momordica charantia]1.39e-72100Show/hide
Query:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
        MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
Subjt:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ

Query:  ASCVNTY
        ASCVNTY
Subjt:  ASCVNTY

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]9.91e-2549.64Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYG
        M+NL+ SLP+H RH +   +  RA M  KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+       +E NHAF PP  ST  S D K  Y 
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYG

Query:  LVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY
        LVS        VGE+ +  +         GFQAS V+ +
Subjt:  LVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]8.05e-2761.47Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAV-STDPKGYYGLVSGKVGELGEGCFR-QDEMQG-FSGF
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SP DAF+  A    E+ N  FYPPP S A  S DPK  Y   SG V       F  Q EM+G FSGF
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAV-STDPKGYYGLVSGKVGELGEGCFR-QDEMQG-FSGF

Query:  QAS-CVNTY
        QAS CVNT+
Subjt:  QAS-CVNTY

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein2.42e-2849.29Show/hide
Query:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA--VSTDPKGYYG--
        +LP +  H + SQ  N+A ++   KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS++  VS DPK  YG  
Subjt:  SLPDHHRHHQRSQAPNRAIME---KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA--VSTDPKGYYG--

Query:  ----LVSGKVGELGEGCFRQDEMQ--GFSGFQAS-CVNTY
            ++  ++ +  EG + + EM+   FSGFQAS CVN +
Subjt:  ----LVSGKVGELGEGCFRQDEMQ--GFSGFQAS-CVNTY

A0A0D3BXG3 VQ domain-containing protein2.07e-1144.04Show/hide
Query:  QAPNRAIMEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDP--KGYYGLVSGKVGEL-GEGCFRQ
        Q   RA   KPIKV+YISNPM VK  + S+FRE+VQ LTGQ++ D   E P F      +H+  PPPP T     P  + +  LV+G    L GE  F  
Subjt:  QAPNRAIMEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDP--KGYYGLVSGKVGEL-GEGCFRQ

Query:  DEMQGFSGF
           +GFSG+
Subjt:  DEMQGFSGF

A0A5A7VDH6 VQ motif-containing protein8.57e-3049.66Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTD
        M+NL  +LP    H + SQ  N+        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS++   VS D
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAI----MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTD

Query:  PKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQAS-CVNTY
        P+  YG  SG      ++ +  EG + + EM+G FSGFQAS CVN +
Subjt:  PKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQAS-CVNTY

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like6.74e-73100Show/hide
Query:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
        MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
Subjt:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ

Query:  ASCVNTY
        ASCVNTY
Subjt:  ASCVNTY

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like4.80e-2549.64Show/hide
Query:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYG
        M+NL+ SLP+H RH +   +  RA M  KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+       +E NHAF PP  ST  S D K  Y 
Subjt:  MDNLRRSLPDHHRHHQRSQAPNRAIM-EKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYG

Query:  LVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY
        LVS        VGE+ +  +         GFQAS V+ +
Subjt:  LVSGK------VGELGEGCFRQDEMQGFSGFQASCVNTY

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic4.3e-0442.42Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D                   PP P+T  + D
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD

Q9LDH1 Sigma factor binding protein 1, chloroplastic8.7e-0540Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    + +H   PP  + A     +  +G       E    E  F  D+M  GFSGF
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.1e-0542.42Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D                   PP P+T  + D
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD

AT3G56710.1 sigma factor binding protein 16.2e-0640Show/hide
Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    + +H   PP  + A     +  +G       E    E  F  D+M  GFSGF
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACCTTAGAAGAAGCCTTCCTGATCATCACCGTCATCACCAAAGAAGCCAAGCTCCCAATAGAGCAATAATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAA
CCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAG
AAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGACGGACCCTAAGGGTTATTATGGCTTGGTCTCCGGTAAGGTCGGCGAGCTCGGCGAA
GGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCGTTAATACGTAT
mRNA sequenceShow/hide mRNA sequence
ATGGATAACCTTAGAAGAAGCCTTCCTGATCATCACCGTCATCACCAAAGAAGCCAAGCTCCCAATAGAGCAATAATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAA
CCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAG
AAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGACGGACCCTAAGGGTTATTATGGCTTGGTCTCCGGTAAGGTCGGCGAGCTCGGCGAA
GGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCGTTAATACGTAT
Protein sequenceShow/hide protein sequence
MDNLRRSLPDHHRHHQRSQAPNRAIMEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGE
GCFRQDEMQGFSGFQASCVNTY