CuGenDBv2

Gene ID	MC08g2375
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein
Genome location	MC08:32562473..32566193
RNA-Seq Expression	MC08g2375
Synteny	MC08g2375
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

1.11e-87

90.6

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDDND EEYDVEQEE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

6.02e-101

100

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
        YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

1.11e-87

90.6

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D EEYDVEQEE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

3.89e-85

88.44

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D   DVEQE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

3.18e-87

89.93

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D EEYDVEQEE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FW87 Uncharacterized protein

1.45e-80

82.67

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGR+YQGQLMQMTMMATPN+N+ELHYLN EDR+LRWLLVKHR+TK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK
        YGLEFL+EDD KGELSKF R  I  D+D DE+DDDDD DEEYDV+QEE K
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK

A0A6J1CN79 uncharacterized protein LOC111013137

2.91e-101

100

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
        YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

A0A6J1FEF6 uncharacterized protein LOC111443208

5.38e-88

90.6

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D EEYDVEQEE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDND-EEYDVEQEE

A0A6J1KXT7 uncharacterized protein LOC111498530

1.88e-85

88.44

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D   DVEQE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQE

A0A7N2L1D1 Uncharacterized protein

1.07e-82

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGR+YQGQLMQMTMMATPN+NKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK
        YGLEFLSEDD KGELSKF R  I  DDD DE+DDDDD+DE YDV+QEE K
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.6e-43

64.71

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR YQGQLMQ+TMM TPNMNKELHYLNKED++LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD
         G    SE +    +      G + D  + +EDD++
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.1e-38

61.03

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR Y     Q+TMM TPNMNKELHYLNKED++LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD
         G    SE +    +      G + D  + +EDD++
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD

Sequences

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CDS sequence

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CAAATTTCTTTTGCCCTTGTCTTCTCTCTCCATCTGACGAAATCCTCCTCTCCCTCCGTTAAAACACCCAGCGGGGCCGGCGCCGGCCGCCATTTCATTTCTCACGGCAC
TCGGTTAGAATTTGCAACAGCTTTAAAGAGGAACTTGGGTGCTAAAGAAGAGGAGATTAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGG
AGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGTCACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGAATTAAG
AAACTTGATGGAAGATTTTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACAAGGAGTTACATTACTTGAACAAGGAAGATCGTATGTTGCG
ATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGCGAAGACGATGTGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGTATAATGGGTGATG
ATGACACTGATGAAGAAGACGATGATGATGATAATGATGAAGAATACGATGTGGAACAAGAAGAGAGCAAAGGAGAGTGA

mRNA sequence

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CTCAAATTTCTTTTGCCCTTGTCTTCTCTCTCCATCTGACGAAATCCTCCTCTCCCTCCGTTAAAACACCCAGCGGGGCCGGCGCCGGCCGCCATTTCATTTCTCACGGC
ACTCGGTTAGAATTTGCAACAGCTTTAAAGAGGAACTTGGGTGCTAAAGAAGAGGAGATTAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAA
GGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGTCACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGAATTA
AGAAACTTGATGGAAGATTTTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACAAGGAGTTACATTACTTGAACAAGGAAGATCGTATGTTG
CGATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGCGAAGACGATGTGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGTATAATGGGTGA
TGATGACACTGATGAAGAAGACGATGATGATGATAATGATGAAGAATACGATGTGGAACAAGAAGAGAGCAAAGGAGAGTGATTTTGCTCGTCTCTCTAATGATCATGGC
CCAAGTTTGAACTTGTTGAAGGACCTCTGCCACAATTCTTGTAGTTTCTTTAGTTGTCCATATCATCTGTGGTTCTCTTATATCATATTGGAAATGCATGCATAAACCAA
AGGTCCTTAGAATGTCATGTTTGGAAGATGTTCTCCAAATCTCGGGTTCGAGCCTCTAGATGGGAAGTTTATGAAATAAATTTTTTTCATGTCTTTTGAAGTCAGTGTTG
GATCACGTGGTGTTTTTTTGATGAGTAGTAGGGTCGAGCTTGATACCATGAATATTAAAGAAAAGTGTAATCTTGCTTGCAGTGATATAGTATTAAATGAAGAAAATATG
AGACTATTTAGACGAGTTTTAGTCCTAAGTGATGTTCAA

Protein sequence

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QISFALVFSLHLTKSSSPSVKTPSGAGAGRHFISHGTRLEFATALKRNLGAKEEEIKMPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIK
KLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

MC08g2375 (gene) of Bitter gourd (Dali-11) v1 genome