CuGenDBv2

Gene ID	MC08g2388
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein SHORT-ROOT 2-like
Genome location	MC08:32663218..32663673
RNA-Seq Expression	MC08g2388
Synteny	MC08g2388
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063552.1 uncharacterized protein E6C27_scaffold329G00590 [Cucumis melo var. makuwa]

5.73e-78

79.39

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_008460859.1 PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]

5.73e-78

79.39

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_011650096.1 NEDD8-specific protease 1 [Cucumis sativus]

1.79e-76

80.37

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-------HHRRM-SISSDGDM-PKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR
        MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH       HHRRM SISSDG+  P PLMRCSSAKDKSRS    + KDR P FISRLGRHGRR
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-------HHRRM-SISSDGDM-PKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR

Query:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        HSASADFHYDA SYSLNFDEGYDEGHVDD+FPLRNFSSRLPASPPK+ PS+++  SRE+ TA+
Subjt:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_023536962.1 uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]

4.79e-76

80.12

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRHS-
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHH     H RRMS SSDGD+P PL RCSSAKDKSRS  SPE+K D RPHFISRLGRH RRHS 
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRHS-

Query:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        AS DFHYDA SY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPK+ PSSS  TSRE+TTAY
Subjt:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_038890730.1 homeobox protein MOX-2 [Benincasa hispida]

1.36e-84

85.62

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHHH------RRMSISSDGDMPKPLMRCSSAKDKSRS--SPENKDRRPHFISRLGRHGRRHSA
        MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHHH      RRMSISSDGD P PLMRCSSAKDKSRS  SPE KDRRPHFISRLGRHGRRHSA
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHHH------RRMSISSDGDMPKPLMRCSSAKDKSRS--SPENKDRRPHFISRLGRHGRRHSA

Query:  SADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        SADF YDA SY+LNFDEGYDEGHVDD+FPLRNFSSRLPASP K+ PSSS N SRE+ TA+
Subjt:  SADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LL60 Uncharacterized protein

8.66e-77

80.37

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-------HHRRM-SISSDGDM-PKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR
        MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH       HHRRM SISSDG+  P PLMRCSSAKDKSRS    + KDR P FISRLGRHGRR
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-------HHRRM-SISSDGDM-PKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR

Query:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        HSASADFHYDA SYSLNFDEGYDEGHVDD+FPLRNFSSRLPASPPK+ PS+++  SRE+ TA+
Subjt:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A1S3CDF1 uncharacterized protein LOC103499607

2.78e-78

79.39

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A5D3BFQ4 Uncharacterized protein

2.78e-78

79.39

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A6J1FDP2 uncharacterized protein LOC111444439

6.65e-76

79.5

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRHS-
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHH     H RRMS SSDGD+P PL RCSSAKDKSRS  SPE+K D RPHFISRLGRH RRHS 
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRHS-

Query:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        AS DFHYDA SY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPK+ PSS+  TSRE+TTAY
Subjt:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A6J1HQB7 uncharacterized protein LOC111465710

3.84e-75

79.5

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Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRHS-
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHH     H RRMS SSDGD+P PL RCSSAKDKSRS  SPE+K D RPHFISRLG H RRHS 
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRHS-

Query:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        AS DFHYDA SY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPK+ PSSS  TSRE+TTAY
Subjt:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)

9.3e-06

49.12

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Query:  GRHGRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS
        G    R S    F YD  SYSLNFD+G   GH DDEFP R++S R  A  P  P S+
Subjt:  GRHGRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS

AT5G14890.1 NHL domain-containing protein

9.3e-06

42.25

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Query:  FISRLGRH---------GRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS
        FI R GR+         G        F YD+ SYSLNFD+G   GH +DEFP R++S R  A  P  P S+
Subjt:  FISRLGRH---------GRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS

AT5G35090.1 unknown protein

5.1e-12

34.62

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Query:  SLKEMLKSSLCLSCCLRKHRNGHHHHHRRMSISSDGDMPKPLMRCSSAKDKSRSSPEN---KDRRPHFISRL------------------------GRHG
        SL++ LKS  C++ C    R  +HHHH         ++P  L       +KS  SP     K + P     L                        G+H 
Subjt:  SLKEMLKSSLCLSCCLRKHRNGHHHHHRRMSISSDGDMPKPLMRCSSAKDKSRSSPEN---KDRRPHFISRL------------------------GRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSN
        RRH  +ADFHYD  SY+LNFD+G ++ ++ D FPLRNFS+RLP SPP +  ++ S+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSN

Sequences

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CDS sequence

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ATGGACGATTCCAACGAACACAAGGGAAATTCCTCGCCGTCTTCTCTCAAGGAGATGCTCAAATCCTCTCTGTGTTTGTCTTGCTGCCTCCGTAAGCACCGGAACGGCCA
CCACCACCACCACCGGCGGATGTCGATATCCTCCGACGGCGATATGCCAAAGCCGCTCATGCGGTGTTCCTCCGCCAAGGATAAGTCCAGATCCAGTCCTGAGAACAAGG
ACAGGCGTCCGCATTTTATCTCCCGGCTCGGCCGCCATGGACGCCGTCACTCGGCGTCGGCTGATTTTCACTACGATGCGCACAGTTACTCGCTCAATTTTGACGAAGGA
TACGATGAAGGCCATGTCGATGATGAGTTTCCGCTTAGGAACTTCTCGTCTAGGTTACCGGCTTCTCCGCCGAAGACACCGCCGTCTTCCTCGTCAAATACGTCAAGGGA
GATAACCACGGCGTAC

mRNA sequence

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Protein sequence

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MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHHHRRMSISSDGDMPKPLMRCSSAKDKSRSSPENKDRRPHFISRLGRHGRRHSASADFHYDAHSYSLNFDEG
YDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

MC08g2388 (gene) of Bitter gourd (Dali-11) v1 genome