CuGenDBv2

Gene ID	MC08g2494
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	MC08:33751080..33751247
RNA-Seq Expression	MC08g2494
Synteny	MC08g2494
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

QJS52361.1 ribosomal protein L20 [Indofevillea khasiana]

1.05e-28

94.55

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        +YRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

YP_009456084.1 ribosomal protein L20 [Momordica charantia]

7.77e-31

100

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

YP_009674414.1 ribosomal protein L20 [Siraitia grosvenorii]

3.68e-29

96.36

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

YP_009752689.1 ribosomal protein L20 [Ampelosycios humblotii]

7.41e-29

94.55

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QL+LNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

YP_009752943.1 ribosomal protein L20 [Momordica sessilifolia]

2.23e-30

98.18

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YKGQLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

TrEMBL top hits

e value

%identity

Alignment

A0A2I6C027 50S ribosomal protein L20, chloroplastic

3.76e-31

100

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

A0A514YKV6 50S ribosomal protein L20, chloroplastic

1.78e-29

96.36

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

A0A6C0U950 50S ribosomal protein L20, chloroplastic

1.78e-29

96.36

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

A0A6H0ET10 50S ribosomal protein L20, chloroplastic

3.59e-29

94.55

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QL+LNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

A0A6H0EW12 50S ribosomal protein L20, chloroplastic

1.08e-30

98.18

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YKGQLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

SwissProt top hits

e value

%identity

Alignment

A6MM59 50S ribosomal protein L20, chloroplastic

5.5e-17

78.18

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        A+RDRG+QKR FR LWI RINAVIR N+V+YSYSR IH++YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

A9L9B9 50S ribosomal protein L20, chloroplastic

5.5e-17

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKR+FR LWI RINAV R N+V YSY R IHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

Q09G23 50S ribosomal protein L20, chloroplastic

3.8e-18

83.64

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        A+RDRGRQKRNFR LWI RINAVIR NKV YSYSR IH++YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

Q09WZ4 50S ribosomal protein L20, chloroplastic

1.9e-17

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        A++DRGRQKR+FR LWI RINAVIR NKVYYSYS  IH++YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

Q4VZJ4 50S ribosomal protein L20, chloroplastic

9.1e-20

89.09

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        AYRDRGRQKRNFR LWIARINAVIR N V YSYSRFIHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

6.9e-07

47.27

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        +YRDR  +KR  R LWI RINA  R + V  +Y  FIH + K  + LNRK+L+++
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

ATCG00660.1 ribosomal protein L20

1.6e-16

72.73

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Query:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
        A+RDRG++KR+FR LWI RINAVI    V+YSY+ FIHN+YK QLLLNRKILAQI
Subjt:  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI

Sequences

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CDS sequence

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GCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGTAATTCGATATAATAAGGTATACTACAGTTATAGTAGATTCAT
ACACAATATGTACAAGGGTCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCN

mRNA sequence

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GCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGTAATTCGATATAATAAGGTATACTACAGTTATAGTAGATTCAT
ACACAATATGTACAAGGGTCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCN

Protein sequence

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AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQIX

MC08g2494 (gene) of Bitter gourd (Dali-11) v1 genome