CuGenDBv2

Gene ID	MC08g2576
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem II subunit X
Genome location	MC08:34392374..34392766
RNA-Seq Expression	MC08g2576
Synteny	MC08g2576
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7030501.1 hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.64e-43

70.15

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Query:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS
        MASTSAVS+AMPIT A+   AR++  F  A+ALPLRPS+         PTA+  SNS AKFQVRASLK+KAVAGL  TALTAS+++PEVAEAAGPGV+PS
Subjt:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS

Query:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        L+NFLLSIAAGGVVV AI+GA+ GV+NFDPVKRT
Subjt:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_022154703.1 uncharacterized protein LOC111021896 [Momordica charantia]

3.59e-75

100

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Query:  MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN
        MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN
Subjt:  MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN

Query:  FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
Subjt:  FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

3.94e-45

72.39

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Query:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+         PTA+  SNS AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PS
Subjt:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS

Query:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        L+NFLLSIAAGGVVVTAI+GA+ GV+NFDPVKRT
Subjt:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_022999231.1 uncharacterized protein LOC111493667 [Cucurbita maxima]

2.27e-44

71.64

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Query:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+         PTA+  SNS AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PS
Subjt:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS

Query:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        L+NFLLSIAAGGVVV AI+GA+ GV+NFDPVKRT
Subjt:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

1.13e-44

70.15

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Query:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS
        MASTSA+S+AMPIT A+   AR ++ F  A+ LPLRPS+  N +          SNS+AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PS
Subjt:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS

Query:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        L+NFLLSIAAGGVVVTAI+GAV GVANFDPVKRT
Subjt:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAS0 uncharacterized protein LOC103498700

7.37e-43

67.42

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Query:  MASTSAVSVAMPITKASARSSQRFGR-ARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQ
        MASTSA+S+ MPIT A+ + ++R    A+ LPLRPS+  + +          S+S+AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PSL+
Subjt:  MASTSAVSVAMPITKASARSSQRFGR-ARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQ

Query:  NFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        NFLLSIAAGGVVVTAI+GAV GVANFDPVKRT
Subjt:  NFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A5A7V6L0 Membrane family protein

1.28e-43

68.18

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Query:  MASTSAVSVAMPITKASARSSQRFGR-ARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQ
        MASTSA+S+AMPIT A+ + ++R    A+ LPLRPS+  + +          S+S+AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PSL+
Subjt:  MASTSAVSVAMPITKASARSSQRFGR-ARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQ

Query:  NFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        NFLLSIAAGGVVVTAI+GAV GVANFDPVKRT
Subjt:  NFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1DL14 uncharacterized protein LOC111021896

1.74e-75

100

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Query:  MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN
        MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN
Subjt:  MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN

Query:  FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
Subjt:  FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

1.91e-45

72.39

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Query:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+         PTA+  SNS AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PS
Subjt:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS

Query:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        L+NFLLSIAAGGVVVTAI+GA+ GV+NFDPVKRT
Subjt:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

1.10e-44

71.64

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Query:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+         PTA+  SNS AKFQVRASLK+KAVAGLA TALTAS+++PEVAEAAGPGV+PS
Subjt:  MASTSAVSVAMPITKAS---ARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPS

Query:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        L+NFLLSIAAGGVVV AI+GA+ GV+NFDPVKRT
Subjt:  LQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

4.7e-22

51.15

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Query:  MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN
        MASTSA+S+  P+ +   RSS      + LPL+PS +   T             A + QV+A   DKA+ G++  ALTAS++IPE+AEAAG G++PSL+N
Subjt:  MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQN

Query:  FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        FLLSIA+GG+V+T IIG V GV+NFDPVKRT
Subjt:  FLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCCACTTCCGCAGTCTCGGTGGCGATGCCGATTACTAAGGCGAGCGCGAGGAGCTCCCAACGCTTTGGCAGGGCAAGGGCGTTGCCTCTGAGGCCTTCCAGTTC
CAGCAACCCAACTCCAACTCCAACTCCAACTGCTGCGCCTGCATCGAACTCCGCCGCCAAGTTCCAAGTGCGGGCTTCCTTGAAGGACAAGGCAGTTGCTGGACTCGCTG
TCACTGCGCTCACGGCCTCCCTGCTTATTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGCGTCACTCCTTCTCTCCAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTA
GTGGTCACTGCCATCATCGGTGCAGTTTTCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACC

mRNA sequence

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Protein sequence

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MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSNPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGV
VVTAIIGAVFGVANFDPVKRT

MC08g2576 (gene) of Bitter gourd (Dali-11) v1 genome