; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g0005 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0005
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionribosomal RNA-processing protein 17-like
Genome locationMC09:56481..58347
RNA-Seq ExpressionMC09g0005
SyntenyMC09g0005
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR019186 - Nucleolar protein 12


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594625.1 hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia]3.13e-8274.24Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EKELVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +D  EDEEE+  APISE TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]2.87e-9180.61Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQND
        MV+N+GDEGGELAQ  G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  +   +KK KEEKELVLYGG+LPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQND

Query:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        DHE+E  EEK FAPISE TTYDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP  KVAKQKSR KPRSKR+KKKGR+KK
Subjt:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_022157484.1 ribosomal RNA-processing protein 17-like [Momordica charantia]5.44e-126100Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
        MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD

Query:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
Subjt:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]1.55e-8274.75Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EKELVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +D  EDEEEK  APISE TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]6.11e-8474.5Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGF---KKKKEEKELVLYGGVLPADWPVDKQ
        MV N+G+EG ELAQ    HIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA  I +K     KK++ EK+LVLYGGVLPAD PVD++
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGF---KKKKEEKELVLYGGVLPADWPVDKQ

Query:  NDDHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        NDDHE+  EDEEEK  AP SE TTYDSGNIKVTV TSEVSR+E+I PIDKPQT T+QL +KDKKHNLP+TKKKP  KVAKQ+SR K RSKR+K+KG++KK
Subjt:  NDDHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

TrEMBL top hitse value%identityAlignment
A0A1S3C1A3 ribosomal RNA-processing protein 171.46e-7973.47Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA-HQITQKGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+N+G+EGGELAQ    HIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA  ++  +  KK+K EK+LVLYGGVLPAD  VD QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA-HQITQKGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D EDE+EE    AP SE  TYD+GN+KVTVTTSEVSR+ +I PIDKPQT  +QL+ KDKKHNLPITKKK   KVAKQ+SR K RSKR+KKKGR+KK
Subjt:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like1.39e-9180.61Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQND
        MV+N+GDEGGELAQ  G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  +   +KK KEEKELVLYGG+LPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQND

Query:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        DHE+E  EEK FAPISE TTYDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP  KVAKQKSR KPRSKR+KKKGR+KK
Subjt:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1DWL6 ribosomal RNA-processing protein 17-like2.64e-126100Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
        MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD

Query:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
Subjt:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1EG67 ribosomal RNA-processing protein 171.24e-8174.24Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EK+LVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +D  EDEEEK  APISE T YDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LPITKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1KRQ7 ribosomal RNA-processing protein 172.49e-8173.74Show/hide
Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE  EGG L Q    H+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EK+LVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +D  EDEEEK  APISE TTYDSGNIKVTVTTSEV R+E+I PIDKPQ +TSQL++KDKKH+LPITKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHED--EDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).3.0e-2546.07Show/hide
Query:  DEGGELA-QLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDED
        +E G LA      HI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA +  +   +K ++ +EL++ G     D    +  D+ + ED
Subjt:  DEGGELA-QLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDED

Query:  EEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDK---KHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRR
        EE +  A  S  T YD+G +KVTVTTSE+SR+E+  PI K +T +++  S  K   K  +P+ K KP+ K ++++S  K   KR+KKK  R
Subjt:  EEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDK---KHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAA
AGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAA
AAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCA
TTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACA
GACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAA
GTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAA
AGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAA
AAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCA
TTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACA
GACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAA
GTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA
Protein sequenceShow/hide protein sequence
MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKS
FAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK