CuGenDBv2

Gene ID	MC09g0204
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	MC09:1804362..1807967
RNA-Seq Expression	MC09g0204
Synteny	MC09g0204
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7025877.1 DNA-directed RNA polymerase I subunit rpa49 [Cucurbita argyrosperma subsp. argyrosperma]

3.68e-259

84.51

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K FE  ETHYAEPEANSQ PAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EE V+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+V +DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHL+K+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

2.19e-309

100

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_022964095.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

2.82e-261

84.74

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K FE  ETHYAEPEANSQSPAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EE V+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+V +DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

4.79e-258

83.37

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA DTKSFELE+ HY+EP+ANSQSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKDA+EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ES +V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWS+LED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF   E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

XP_023514670.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

3.27e-261

84.74

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K FE  ETHYAEPEANSQSPAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EEAV+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTG NVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+V +DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYP+FVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

1.06e-309

100

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

1.10e-256

82.92

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA DTKSFELE+ HY+EP++N QSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKD +EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ESP+V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWSYLED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF   E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

1.36e-261

84.74

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K FE  ETHYAEPEANSQSPAKK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EE V+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV E ESP+V +DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS KGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

2.32e-258

83.37

Show/hide

Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA DTKSFELE+ HY+EP+ANSQSPAKK +KSEKKKKRV SVNA IQVLSNHP+KTPPLV YFPSGF+PHKDA+EEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIA+NMIFRLDP++RGSDVSE ES +V ++ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE T A+IARNIPTYN SATTP+EAYPLDKIIL GEWS+LED+YSLL+ EAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKK+LC IFSYITHLIK+KDQ+SM  V+SAK HK PSM+RQKFSSMF   E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

1.20e-257

84.05

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Query:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL
        MA D+K FE  ETHYA PEANSQSP KK +KSEKKKKRV  VN  IQVLSNHPEK PPLVGYFPSG++P+KD +EEAV+EQ S+RA+VYR+K KPNRMQL
Subjt:  MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ
        +VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIA+NMIFRLDPKV GSDV E ESP+V +DELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL
        AKKL SLKQ DD +T+KDLD KMKNVVVNKEALE +NA+I+RNIPTYNASATTPQEAYPLDKIIL GEW +LED+Y LL+AE+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDIQDEEEKKKLCCI+SYITHLIK+KDQ+SMDGVSS +GHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIA+DLRTSPF
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR
        TLR+H+DNLGCKFIRKNNLS VTLPVPL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

4.8e-07

24.38

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Query:  KSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYA
        K  K +   S    ++++L       PPLV    SGF P            ++ R ++ +  N+ NR   ++  T   V F   N   ++TA  +   Y 
Subjt:  KSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYA

Query:  LGVLDKATQSLKIVPIA-ANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQVDDSDTQKDLDEKMKNVVVN
        L V DK  +  KIVP    N   R    ++  D   K+    V   +  Q        L   +GT++S K   +  S  +V         D+ + NV   
Subjt:  LGVLDKATQSLKIVPIA-ANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQVDDSDTQKDLDEKMKNVVVN

Query:  KEALEGTNAEIA------RNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAE------ISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFS
         EAL  T  +IA      R IP  N  A + ++AY L+ II   E+S +  +  LL    E      +   +  F+  R  +L  I++ ++K+    I  
Subjt:  KEALEGTNAEIA------RNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAE------ISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFS

Query:  YITHLIKFKDQNSMDGVSSAKGHKI---PSMLRQKFSSMFSL---LESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGC
        YI+ L  F       G       K+   P +L       F+    + S ++S  + D +I ++LVL L  D +S+D   +A DL          F  +GC
Subjt:  YITHLIKFKDQNSMDGVSSAKGHKI---PSMLRQKFSSMFSL---LESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGC

Query:  KFIR---------------KNNLSLVTLPVPLKFPQLSLKRRR
        + +                  N     L +PL+FP+    R R
Subjt:  KFIR---------------KNNLSLVTLPVPLKFPQLSLKRRR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

2.4e-94

43.54

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Query:  EETHYAEPEANSQSPAKKNRKSEKKKKRVSS----------VNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNK-NKPNRMQ
        E+  Y   E +  +P +  +K  K KK  +           V   +  ++  P++  P+V YF +G++P K   +   +  ++ +  VY++K +   R+Q
Subjt:  EETHYAEPEANSQSPAKKNRKSEKKKKRVSS----------VNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKE-SPTVVDDELSVQEKADRMRELTNLYGTKRSI
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  + +E+E S + V  EL   +  +R R     Y TK+++
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKE-SPTVVDDELSVQEKADRMRELTNLYGTKRSI

Query:  KQAKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISAN-YPSFVRNRI
         + KK  +L   DD+ TQK LD K+  + VN  ALEGT++ +ARNIP YN +ATT  EAYPL+KII  G+WS+LED+Y LL+ E E +   YP FVRNR+
Subjt:  KQAKKLHSLKQVDDSDTQKDLDEKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISAN-YPSFVRNRI

Query:  YKLQDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRT
        Y+L+DI+D+ +K+ +C   + +THL+KFKD+NSM+G  SAK HK+P + RQKF+SMF   ES R+  +K +LLIS+VLVL+L  D F +DP DIAKDLR 
Subjt:  YKLQDIQDEEEKKKLCCIFSYITHLIKFKDQNSMDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRT

Query:  SPFTLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRR
        S   LR HF  LGCKF+++N+ ++ TLP PL FP+++ +RR
Subjt:  SPFTLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAGACACTAAATCTTTTGAATTGGAAGAAACCCATTACGCGGAACCGGAAGCGAACTCACAGTCTCCAGCGAAGAAGAATAGGAAGAGCGAGAAGAAAAAGAA
GCGAGTTTCATCAGTGAATGCCACAATCCAAGTCCTCAGCAACCATCCAGAGAAAACTCCACCGCTAGTTGGTTACTTCCCGTCTGGGTTCAATCCTCACAAGGATGCCG
ATGAGGAAGCGGTCCAGGAACAGAAATCCATTAGGGCTAGGGTTTATAGGAACAAGAACAAACCAAATAGGATGCAGCTGGTTGTAAGTCCAACGGGGTCGAATGTGGAT
TTTGTTGGTACCAACTATTTGGGAGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCGACCCAAAGCTTAAAGATCGTGCCTATCGC
GGCAAACATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTTCTGAAAAGGAATCTCCAACTGTGGTGGATGACGAGCTTTCTGTGCAGGAGAAAGCTGATA
GAATGAGAGAGCTCACCAATCTATATGGAACAAAGAGGTCAATAAAGCAGGCAAAGAAGCTGCATTCTTTGAAGCAAGTAGACGATTCTGACACCCAGAAGGATCTAGAT
GAGAAAATGAAAAATGTAGTGGTGAACAAAGAGGCCTTGGAAGGTACAAATGCGGAAATTGCTCGCAATATACCAACATATAATGCTTCTGCGACTACTCCGCAAGAAGC
TTACCCACTCGACAAGATTATCCTCATGGGAGAATGGAGTTACCTGGAAGATGTTTATTCTCTTTTGCGAGCAGAAGCTGAAATAAGTGCAAATTATCCATCCTTCGTCC
GCAACAGAATTTATAAATTGCAAGATATTCAGGACGAGGAAGAGAAGAAGAAGCTCTGCTGCATATTTTCATACATCACCCATCTAATAAAGTTCAAGGATCAGAATTCT
ATGGATGGTGTTTCTTCTGCGAAGGGCCACAAAATTCCAAGCATGCTACGCCAAAAGTTCTCATCCATGTTCTCGCTTTTGGAGTCAAGAAGGCTGTCGCCAGAGAAATC
CGACCTTCTCATTAGCCACGTTCTGGTGCTTACTCTATTTGCTGATGAATTCAGTAGTGATCCATCAGACATAGCAAAGGATCTGAGAACTAGCCCTTTCACTCTAAGAC
TCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACCTGTCGTTGGTTACGCTACCCGTCCCGCTTAAATTTCCACAGCTGAGTCTAAAGAGACGACGATAA

mRNA sequence

Show/hide mRNA sequence

ATTATGTCTTATTTTGAATTTAAAATACTATTTTGGTTATTCAATGTTTAAGAATATTCTATTTTTAATTATCAAACTTTCAAAATATTTACTTTTAACTTTTTATAGAC
ATGAGTTTTTATTAGAGAATTTTTTATTGTATATAAAGTTTGAGAAAAAAAATATTTAAATCCTAAAGGAAATAAAATAAAACCCATGGATCAAAATCCGCTCATTGTTG
TATCCGATCCGACCCGACCCGACAATAATTCGTTTCGCTGACAGCCCGCGCGCGGCCAGCCCTAACCTGTCTCGCGCCGCCTTCGCTCCCTCGGTCCGTTCTCAGTTGCT
TTCTTATTCTCTTCCAATCGATCTCTTAGAGCCACCGTCGCCGCCTGCGGCTCCCCCGGCCGACAAGAAATCAGTCGTGGCCGCCGTCCATTGCAGCTGGTCCTCTTCTC
TCCTACTCTCTTGAATCCACCTTCAGTAAGATTCGTTGTAATTTCTCTCCTGACAGTTTCATCCCCTCTTTGTTTTCATTGCTCTGTATAATTCGCGTCTGGAAGCTTTT
TGATTGCCAGTAATACCTAAGATATAGAGATTCATACATTCATTTAACCCACGCTGTTGTTCCTAAAGCCACTCTCTCCCTGAAAATTGACAAATCTTATGCGTGTTGCG
AATTCTTCAAACGAAGTGAAGCTCTACGCTGTTGACGTTCGTGGGTGAATTGTGAAATCTAAGGAATTCAAATTCTACGCATAAACTACCGTGTAAATCTTTCGGAGCTC
ACTGTGATGGCGGCAGACACTAAATCTTTTGAATTGGAAGAAACCCATTACGCGGAACCGGAAGCGAACTCACAGTCTCCAGCGAAGAAGAATAGGAAGAGCGAGAAGAA
AAAGAAGCGAGTTTCATCAGTGAATGCCACAATCCAAGTCCTCAGCAACCATCCAGAGAAAACTCCACCGCTAGTTGGTTACTTCCCGTCTGGGTTCAATCCTCACAAGG
ATGCCGATGAGGAAGCGGTCCAGGAACAGAAATCCATTAGGGCTAGGGTTTATAGGAACAAGAACAAACCAAATAGGATGCAGCTGGTTGTAAGTCCAACGGGGTCGAAT
GTGGATTTTGTTGGTACCAACTATTTGGGAGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCGACCCAAAGCTTAAAGATCGTGCC
TATCGCGGCAAACATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTTCTGAAAAGGAATCTCCAACTGTGGTGGATGACGAGCTTTCTGTGCAGGAGAAAG
CTGATAGAATGAGAGAGCTCACCAATCTATATGGAACAAAGAGGTCAATAAAGCAGGCAAAGAAGCTGCATTCTTTGAAGCAAGTAGACGATTCTGACACCCAGAAGGAT
CTAGATGAGAAAATGAAAAATGTAGTGGTGAACAAAGAGGCCTTGGAAGGTACAAATGCGGAAATTGCTCGCAATATACCAACATATAATGCTTCTGCGACTACTCCGCA
AGAAGCTTACCCACTCGACAAGATTATCCTCATGGGAGAATGGAGTTACCTGGAAGATGTTTATTCTCTTTTGCGAGCAGAAGCTGAAATAAGTGCAAATTATCCATCCT
TCGTCCGCAACAGAATTTATAAATTGCAAGATATTCAGGACGAGGAAGAGAAGAAGAAGCTCTGCTGCATATTTTCATACATCACCCATCTAATAAAGTTCAAGGATCAG
AATTCTATGGATGGTGTTTCTTCTGCGAAGGGCCACAAAATTCCAAGCATGCTACGCCAAAAGTTCTCATCCATGTTCTCGCTTTTGGAGTCAAGAAGGCTGTCGCCAGA
GAAATCCGACCTTCTCATTAGCCACGTTCTGGTGCTTACTCTATTTGCTGATGAATTCAGTAGTGATCCATCAGACATAGCAAAGGATCTGAGAACTAGCCCTTTCACTC
TAAGACTCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACCTGTCGTTGGTTACGCTACCCGTCCCGCTTAAATTTCCACAGCTGAGTCTAAAGAGACGA
CGATAAGTGATATGGTTAGAATGTAGTAGTTACCCTGTTATTGTAATTGGAAGAAAGAAGCTGAATTCTATTAGTTTTGTGGAGGAAATCAAATTTACATGTCATTTATT
TCGTAGTCTAAACAGGATCATATTTCTATGAAAGGCGTTTTCTTGTTTGGTGGCTGAAGCTTATTTGGAAACGAATCTAATGATTGAGTTTTAAACTTGGTAATGGTAGG
TACCTTTTGTTTATTATCAATTTATAGTTGAG

Protein sequence

Show/hide protein sequence

MAADTKSFELEETHYAEPEANSQSPAKKNRKSEKKKKRVSSVNATIQVLSNHPEKTPPLVGYFPSGFNPHKDADEEAVQEQKSIRARVYRNKNKPNRMQLVVSPTGSNVD
FVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIAANMIFRLDPKVRGSDVSEKESPTVVDDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQVDDSDTQKDLD
EKMKNVVVNKEALEGTNAEIARNIPTYNASATTPQEAYPLDKIILMGEWSYLEDVYSLLRAEAEISANYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKFKDQNS
MDGVSSAKGHKIPSMLRQKFSSMFSLLESRRLSPEKSDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTLPVPLKFPQLSLKRRR

MC09g0204 (gene) of Bitter gourd (Dali-11) v1 genome