; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g0219 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0219
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationMC09:1942152..1947826
RNA-Seq ExpressionMC09g0219
SyntenyMC09g0219
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148393.1 uncharacterized protein LOC111017052 isoform X1 [Momordica charantia]4.42e-227100Show/hide
Query:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
        MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
Subjt:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR

Query:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
        PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
Subjt:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK

Query:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
        TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Subjt:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG

Query:  MHIEYARSKMRKS
        MHIEYARSKMRKS
Subjt:  MHIEYARSKMRKS

XP_022148402.1 uncharacterized protein LOC111017052 isoform X2 [Momordica charantia]8.25e-22599.68Show/hide
Query:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
        MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
Subjt:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR

Query:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
        PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
Subjt:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK

Query:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
        TERS EAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Subjt:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG

Query:  MHIEYARSKMRKS
        MHIEYARSKMRKS
Subjt:  MHIEYARSKMRKS

XP_022964622.1 protein WHI4 [Cucurbita moschata]3.11e-17693.51Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]1.80e-17593.51Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]1.09e-17693.89Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A5A7V0X3 Protein WHI42.39e-17391.22Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D N+QETSSDDGGSEPDEPSKK ++S+EAV+TP++A+S PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE++EQA KVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X12.14e-227100Show/hide
Query:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
        MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
Subjt:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR

Query:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
        PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
Subjt:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK

Query:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
        TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Subjt:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG

Query:  MHIEYARSKMRKS
        MHIEYARSKMRKS
Subjt:  MHIEYARSKMRKS

A0A6J1D4Z1 uncharacterized protein LOC111017052 isoform X23.99e-22599.68Show/hide
Query:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
        MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR
Subjt:  MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRR

Query:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
        PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK
Subjt:  PGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKK

Query:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
        TERS EAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Subjt:  TERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG

Query:  MHIEYARSKMRKS
        MHIEYARSKMRKS
Subjt:  MHIEYARSKMRKS

A0A6J1HI97 protein WHI41.51e-17693.51Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 28.71e-17693.51Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL

Query:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        SKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a7.1e-1338.95Show/hide
Query:  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 23.5e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 23.5e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.6e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 23.2e-1340.66Show/hide
Query:  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N +    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-3835.36Show/hide
Query:  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNG
        P +S +  T     AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG
Subjt:  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNG

Query:  VKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCS
        + FD +  S LHI+LA+SN + K       +  + K K     +  T+++ G      P   +   +    +P+ +  +       P           C 
Subjt:  VKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCS

Query:  TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG-MHIEYARSKM
        TLFIAN+GPNC E EL +V S+  GF  LK++   G PVAF DF++V  + + +  LQG++L SS  G  + ++YARS+M
Subjt:  TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein8.0e-3635.07Show/hide
Query:  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNG
        P +S +  T     AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG
Subjt:  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNG

Query:  VKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCS
        + FD +  S LHI+LA+SN + K       +  + K K     +  T+++ G      P   +   +    +P+ +  +       P           C 
Subjt:  VKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCS

Query:  TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRG
        TLFIAN+GPNC E EL +V S+  GF  LK++   G PVAF DF++V  + + +  LQG++L SS  G
Subjt:  TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-3634.88Show/hide
Query:  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNG
        P +S +  T     AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG
Subjt:  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNG

Query:  VKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCS
        + FD +  S LHI+LA+SN + K       +  + K K     +  T+++ G      P   +   +    +P+ +  +       P           C 
Subjt:  VKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV-------PYEHHEKTDGGHCS

Query:  TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRK
        TLFIAN+GPNC E EL +V S+  GF  LK++   G PVAF DF++V  + + +  LQG++L SS  G +    +R  MRK
Subjt:  TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-8056.66Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALS
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R K    +Q+  SD+G S+PDE         P +     SEA   P +   
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALS

Query:  VPYEHHEK-TDGGH----CSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIE
            H EK ++GG     CSTLFIANLGPNC EDEL ++LS+YPGF++LK+RA+ GMPVAFADFEE+EQA   M  LQG++L SSDRGGMHIE
Subjt:  VPYEHHEK-TDGGH----CSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-8861.48Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALSVPYEHHEK-TDGGH----
        Q+GS LHIELARSNSRRK +PG G YVVID R K    +Q+  SD+G S+PDE         P +     SEA   P +       H EK ++GG     
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNALSVPYEHHEK-TDGGH----

Query:  CSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRK
        CSTLFIANLGPNC EDEL ++LS+YPGF++LK+RA+ GMPVAFADFEE+EQA   M  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  CSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAACGAAGCACGCAGACAGGCAGTAGAAGAGATCTTTTACCCGACTAACAAACCCAGCCGGGACCTTTCAGACTCCGCCGTGTTCGGAGTTAATTCCGGCCG
ATTTCCATCGATTTCCGCCGTCAATTTCACCGGGAATTCGCCGATGGCACACCAGCCCTACGATCCTTACTATCTCTACCATCAACCAGATCCGAACTACAGTGACCGGA
GCAATATCAACACGCTCTTCATCTCCGGTCTCCCAGACGACGTCAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTAC
ACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATC
AGTTCTGCATATTGAACTCGCCAGGTCAAATTCTAGGAGAAAACATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAG
AAACATCAAGTGATGATGGTGGCAGTGAACCTGATGAACCATCAAAGAAGACCGAACGAAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGAG
CATCATGAAAAAACTGATGGAGGACACTGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGGGGGAAGTCTTGTCCAAATATCCTGGGTT
CAACGTGCTAAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAACTTCAGGGCAGCATGCTAC
CATCATCAGACCGTGGCGGCATGCATATAGAGTATGCACGGTCTAAAATGAGGAAGTCTTAA
mRNA sequenceShow/hide mRNA sequence
AGCCGATTCAAATAGTTCATAAAAGTTTGATTCCTACAATTAAAAAAGAATTAAATTGATTTGTACCCAACATTTTGTTCTAATTCTAGTTCATACCCAATAAAGTCAGA
GGACCAATTCTAGGTTTCAACTACTCACCGACAATTCTTTTATCCGTCGTCACAAAGTTCCACGACCTTCCTCCTCCGTCCTCCGTCGTCGTCCCCAATCTCATCTCCGG
AATCTCCGCCACTCCGATGACCACCTACGGCACGATCCCGGCCTCCGCCGCACCCGGAGCCTCCACCGACCTCGAGTTCTTCTCCCGCGCCAAACAGCGAGTTAAAGCCG
GTCTCGCCACTCGCGCTCCATGGAGGCTCATGTTCGATTTCCACTCCTTCACCCTCCCGTTCAACTTCCGCGACACTTTCTCTCGGATCAAGACCAACATCGCCTACTTC
CGCATGAATTATGTCATAATCGTCCTCGTAATCCTCTTTCTAAGCCTCATATGGCATCCGATTTCCCTCATAGTCTTCTCAATCATGATTGCCGTTTGGCTGTTCCTGTA
TTTCCTTCGCGACGAGCCTCTGGTTCTCTTCCGCCGTCTGATTGACGATCGAGTGGTGTTGGCAGTGCTGTCGGTGCTCACGCTTGCGTTCTTGTTTCTGACCGACGCGA
CGCTCAATATTCTGTTGTCGCTTCTGATCGGCGCCGTGGTGGTGCTGATCCACGCCGCCGTGAGGAGGACGGATGACCTGTTCTTGGACGAAGAAGCTACCGCCGTCTTC
ACCGTCAGTGCGAGCGCTCCTGGATCTTCGATTTCGTTTTGATGGATCGTAATGTTTAATGTCGTTTAATCGTTTCGAATGAAGAAGAACGAAGCACGCAGACAGGCAGT
AGAAGAGATCTTTTACCCGACTAACAAACCCAGCCGGGACCTTTCAGACTCCGCCGTGTTCGGAGTTAATTCCGGCCGATTTCCATCGATTTCCGCCGTCAATTTCACCG
GGAATTCGCCGATGGCACACCAGCCCTACGATCCTTACTATCTCTACCATCAACCAGATCCGAACTACAGTGACCGGAGCAATATCAACACGCTCTTCATCTCCGGTCTC
CCAGACGACGTCAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGC
CACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCCAGGTCAAATT
CTAGGAGAAAACATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAGAAACATCAAGTGATGATGGTGGCAGTGAACCT
GATGAACCATCAAAGAAGACCGAACGAAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGAGCATCATGAAAAAACTGATGGAGGACACTGCTC
CACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGGGGGAAGTCTTGTCCAAATATCCTGGGTTCAACGTGCTAAAATTGCGTGCTAAAAGTGGAA
TGCCGGTTGCATTTGCTGATTTTGAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGTGGCGGCATGCATATAGAG
TATGCACGGTCTAAAATGAGGAAGTCTTAATTGAAAATCATTCATCAGTCTAGTATGACTCAAAAATACTGATCGATTTGCTGCAAGGAATGCTTGCTTGTGGTTATTGG
CAGGGACCATTTGCTGCTGCTCTGAAGTTCTGTGGCATTATTCAATCTGGTATCGGTTCAAGTGCTTGCAAACTACACATCACTGCCTAAATTGTGACAACTGATGATGT
GAACTGATAAACTCATGCGCATTTTAAGTAAAAATA
Protein sequenceShow/hide protein sequence
MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKY
TGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYE
HHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS