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MC09g0467 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0467
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 11-like
Genome locationMC09:4136819..4138492
RNA-Seq ExpressionMC09g0467
SyntenyMC09g0467
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]1.17e-7089.74Show/hide
Query:  TMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELD
        TMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD
Subjt:  TMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELD

Query:  HLKFELESELSRFSRAY
         LK+ELE   SRFSR Y
Subjt:  HLKFELESELSRFSRAY

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]4.32e-7292.24Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE E+SRFSRAY
Subjt:  LKFELESELSRFSRAY

XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]1.06e-7293.1Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELESE+SRFSRAY
Subjt:  LKFELESELSRFSRAY

XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]1.98e-77100Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LKFELESELSRFSRAY
Subjt:  LKFELESELSRFSRAY

XP_038899336.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]2.06e-7090.52Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+G+ILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE E+SRFSR Y
Subjt:  LKFELESELSRFSRAY

TrEMBL top hitse value%identityAlignment
A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like5.14e-7393.1Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELESE+SRFSRAY
Subjt:  LKFELESELSRFSRAY

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like9.59e-78100Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LKFELESELSRFSRAY
Subjt:  LKFELESELSRFSRAY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X12.01e-7089.66Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR Y
Subjt:  LKFELESELSRFSRAY

A0A6J1KVB7 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X25.20e-6888.79Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+R  TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR+Y
Subjt:  LKFELESELSRFSRAY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X11.42e-7089.66Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR+Y
Subjt:  LKFELESELSRFSRAY

SwissProt top hitse value%identityAlignment
P52435 DNA-directed RNA polymerase II subunit RPB11-a1.1e-2246.08Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q32P79 DNA-directed RNA polymerase II subunit RPB111.1e-2246.08Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 114.0e-4975.86Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK + E+E+++FS  +
Subjt:  LKFELESELSRFSRAY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb115.8e-2447.06Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHT+GN++RMQL  D +++FA Y++PHPL++ + IRI T + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q9VJE4 DNA-directed RNA polymerase II subunit RPB118.3e-2350Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL
        MN P  +E F++ EG KK+  E DTK+ NAA F + +EDHT+GN++R QL +D NVLFA Y++PHPL+++ +IRI T +  SP +A+  A+ DL  EL
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL

Arabidopsis top hitse value%identityAlignment
AT3G52090.1 DNA-directed RNA polymerase, RBP11-like2.8e-5075.86Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK + E+E+++FS  +
Subjt:  LKFELESELSRFSRAY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.6e-4560.27Show/hide
Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++R                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR--------------------------

Query:  ----IHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY
            IHT SQSSPMQAYNQA+NDLDKELD+LK + E+E+++FS  +
Subjt:  ----IHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAAACACCATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCAT
ACTAGAGAGAGAGGATCATACCGTCGGAAACATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAA
TACTTATCCGGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGAGT
GAGCTTTCAAGGTTCTCGAGGGCCTATTAG
mRNA sequenceShow/hide mRNA sequence
AGAAACACCATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCAT
ACTAGAGAGAGAGGATCATACCGTCGGAAACATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAA
TACTTATCCGGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGAGT
GAGCTTTCAAGGTTCTCGAGGGCCTATTAGTTTTACCTTCAAAGGAGACGAAGGGGAAGTTTTGTTATCTAGCTATCTGCCCATATTAGATTCTCGATTCTTTGCATATG
TCCTTCAACTCAATAAATTCCAATTGGCAACTGAATGCCAAAAATAAATTTTATGGCCATCTTAGTCTAATATAAATTCGAAATAAATTCTGCGATACCCTTGCTGGCCT
GAGTTAGATTAGAGGATGTTTCTCTTGCTTAACCATGAGAAATATGAGTTAATTAAGATTGGTAAATTGCTGCTCAAAGTAAAGACAATTGCTTTTTTATTTGTTTTTGT
TCTTTCAGTACAACTAATTGGAATAATAGGAGTTCGAACTTCCAGATCTCAAGAGAAAGAGTAAATGTCAAAGTTATTTT
Protein sequenceShow/hide protein sequence
RNTMNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELES
ELSRFSRAY