CuGenDBv2

Gene ID	MC09g0588
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	MC09:5417313..5420830
RNA-Seq Expression	MC09g0588
Synteny	MC09g0588
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

1.71e-179

79.75

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTS +VSSSHS EFI + + KSKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
        GSPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

5.68e-178

79.14

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTS +VSSSHS EFI + + +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

3.09e-178

79.14

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTS +VSSSHS EFI + + +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_022155011.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Momordica charantia]

6.32e-229

100

Show/hide

Query:  MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
        MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
Subjt:  MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY

Query:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
        KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
Subjt:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE

Query:  EPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
        EPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
Subjt:  EPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN

Query:  DFGPLGNLKRQMQKNS
        DFGPLGNLKRQMQKNS
Subjt:  DFGPLGNLKRQMQKNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

7.30e-181

80.86

Show/hide

Query:  MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQAT------MLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS
        MSATFPTS +VSSSHSNEFI++ +LKSKGN SF+S+     C+VP  F  NIQ +      MLK  S+K VKP YQSLFEDN II+DWED+ GD EEMGS
Subjt:  MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQAT------MLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS

Query:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS
        PWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRV K VKDYPFGTPVQIS+DVTRKEKKLRLDGIVKTVITL+CYRCCE A EC+FS
Subjt:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS

Query:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNC
        NFS+ILSEEPIEEP+VINMGIISGQD F T+D NSD+DDEEL+DLDDQLYFP +EKEIDISKNIRDILHLEITMNAIC+PGCKGMCL CGINLN GSCNC
Subjt:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLK+QMQKNS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

1.50e-178

79.14

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTS +VSSSHS EFI + + +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

2.75e-178

79.14

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTS +VSSSHS EFI + + +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A5A7VN29 Uncharacterized protein

8.28e-180

79.75

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTS +VSSSHS EFI + + KSKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
        GSPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A5D3D2J4 Uncharacterized protein

3.02e-178

79.32

Show/hide

Query:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS
        FKM ATFPTS +VSSSHS EFI + + KSKGN SFNS  R       F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEMGS
Subjt:  FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS

Query:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS
        PWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+FS
Subjt:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS

Query:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNC
        NFS++LSEEPIEEP+VINMGIISGQD F T + NSD+DDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEITMN ICNPGCKGMCL CGINLN GSCNC
Subjt:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

A0A6J1DQF0 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

3.06e-229

100

Show/hide

Query:  MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
        MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
Subjt:  MSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY

Query:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
        KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
Subjt:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE

Query:  EPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
        EPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
Subjt:  EPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN

Query:  DFGPLGNLKRQMQKNS
        DFGPLGNLKRQMQKNS
Subjt:  DFGPLGNLKRQMQKNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

2.1e-52

50.7

Show/hide

Query:  SPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLR--VTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAEC
        SPWEGAV Y+R+++V H+EY +TLERLG   LS+  S++RA+ +GL      +    P  TPV +S+DVTR+  +LRLDGIV+TVITL C+RC EPA + 
Subjt:  SPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLR--VTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAEC

Query:  VFSNFSLILSEEPIEEPEVINMGIISGQDK---FMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLN
        +F+NFSL+L+E+P+EE   +        DK    +    + DQD    ID DD+L+FP  +KEIDISK+IRD++HLEIT++A+CNP CKG+CL CG NLN
Subjt:  VFSNFSLILSEEPIEEPEVINMGIISGQDK---FMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLN

Query:  -IGSCNCSKQDVK
           SC C  ++V+
Subjt:  -IGSCNCSKQDVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

7.8e-84

59.11

Show/hide

Query:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD
        FTE I+   L   +   +  + +S  E + I  DWEDQE + E+ GSPWEG+V Y+RN+SV+HVEYCTTLERLG  +LSTDVSK RAS MGLRVTK VKD
Subjt:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD

Query:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPP
        YP GTPVQ+S+DV RK+KKLRLDGIV+TVITL C RC E   E +FSNFSL+L+EEP+EEP+VI++G   G DK     ++ D +D+  ID +D+L+FPP
Subjt:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPP

Query:  VEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK
          KEIDISK+IRD++HLEIT+ AIC+  CKGMCL+CG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  VEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

5.5e-85

59.11

Show/hide

Query:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD
        FTE I+   L   +   +  + +S  E + I  DWEDQE + E+ GSPWEG+V Y+RN+SV+HVEYCTTLERLG  +LSTDVSK RAS MGLRVTK VKD
Subjt:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD

Query:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPP
        YP GTPVQ+S+DV RK+KKLRLDGIV+TVITL C RC E   E +FSNFSL+L+EEP+EEP+VI++G   G DK     ++ D +D+  ID +D+L+FPP
Subjt:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDQNSDQDDEELIDLDDQLYFPP

Query:  VEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK
          KEIDISK+IRD++HLEIT+ AIC+  CKGMCL+CG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  VEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK

Sequences

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CDS sequence

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mRNA sequence

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TTTAAGATGTCAGCTACATTTCCCACATCATTAATAGTTTCATCTTCTCATTCCAATGAATTTATTAGGCTTTGCTTCTTGAAATCCAAAGGGAATGCTTCTTTCAATTC
TAATTTCCGCTTTGTTGGTTGTAAAGTTCCATTTACGGAAAATATCCAGGCAACCATGCTAAAATTTGCTTCCCTAAAGGGTGTGAAACCTGCTTATCAGTCCCTTTTTG
AAGACAACATTATAATTTCTGATTGGGAGGATCAAGAAGGGGACACTGAAGAGATGGGGTCACCTTGGGAAGGAGCAGTTACTTATAAGAGGAACTCTTCAGTTTCTCAT
GTGGAGTACTGCACAACATTAGAGAGGCTTGGATTTGAAAAGCTTTCGACCGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTGCGGGTAACAAAGGCTGTGAAAGA
TTATCCATTCGGAACGCCTGTTCAAATCTCTATTGATGTTACAAGGAAAGAAAAAAAGTTGAGGCTTGATGGGATTGTTAAAACTGTCATCACTCTTGATTGCTATAGGT
GTTGTGAACCTGCTGCTGAATGTGTTTTCTCAAATTTTTCACTTATACTGAGCGAGGAACCGATTGAGGAACCTGAGGTCATAAACATGGGAATCATCAGTGGGCAGGAT
AAGTTCATGACATTCGATCAAAATAGTGATCAAGATGATGAAGAGTTGATTGATTTGGATGACCAACTCTACTTTCCTCCTGTAGAGAAAGAAATAGATATATCAAAGAA
CATAAGAGACATTTTGCATCTGGAAATCACAATGAATGCGATATGCAACCCGGGATGCAAAGGTATGTGTCTGAGATGTGGTATAAATTTGAACATTGGAAGTTGTAACT
GTAGTAAACAGGATGTAAAGAAGAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCATAATAGTTGAATGCAGATCACTGTGTTCCTCAAATT
TTTTATTTCCCTCTTAGGTGAGCTCTTCTACAATCATCTTTCTATAATTTCATTCCTTTTTCCTTTTGAGCTATATTCATTTAGAGCACCTACAATACTGAAAAATGTGT
ATTATTACTCTGCTTACTTGGGATTGAACCCAATCCCCTCTTTCTAAATTTGAATTGAATAATTTGATGTGACTCTACTCTAGCATGATAGCATGGCTGCTTTTATTATC
TATTTTGTTGGAGCATTTGAATAGAGGGGTGGAGCCAAAATTTTTTTTTTAGGGAAGGGCAAATTTTGTTTACGTTCGAACTTTGCTTATATATATAATCTTTCGAGTAA
AAAATTTGGGGACTAGAGTAAAACTACAAAATCTTTTTTGAGTTTGACAGGCTAAGATGGGGCAAACTCCTCCTTTTTCAGCTCTGCCCTTCATAATACGAGAAAGTATT
GACATTAGGGCTTGAGTTACCATTGGAGATGATCCTTATTACACCCCTTTTTTCAGTGCTGATCATTGAAGTTTGTTCACTTGCAAAAAATGTAGTCGAGAAGAGTTTAA
TTTGAAGATGGGAAAATAAACTATGTTCAGCAAAATGCCTCTATATATTTAGTATTTTTGGCTCAAGCCTCCCTGTAAATCGAACTTCGTCAAGATTTTTCTTTTAATTT
CGTATTATAGCCATCTCCTTGTAATGTGACGTTCTTTGATTGATTATGATGAATGTTTAGAAAAATGGAGTCTGTTCTTGGATTGATTATGATGAATGTTAGGAAAAGAT
GGAATCTTTGTGAAGTTAAAATCTAGAGGTGAGCATTTTACAGTTGAATGAGTTGTTCTCTCTCTTTCGAAAGTATCTTTATAGCTAACTCTTGTGAAGAATTTGATCCA
CGATACAATGTCATAATTTTACAAAAAAAGTCTTTAGTACACAAAGATTGTTGCGATACAATGTCATATTTTTGGAAAAAGTCTAAGCACACAAGATCTCGATTTCGCTT
AGCTTTATCGGACTGTCATCTGTAGTTTAAGTTTTCTGAGTCTTTTTTCAAAAGTTGAATAACATTTTTTAGGCAACTAAAAAAAAAGGTTTCAAATGCATCACTTCCCA
ACTTTTGAACAATTAGTTTCTTATAAGATCATCTTCTAGTTGATTGTAATGTACTCACAGTCACCTTCTTTAGCTGGGCAGTTTGAACCGTTTTGTTTGACAAAGATCGA
AATTTCAGTCCCGACATGTTAGTCTGGGTTGGTTTTAGCTCGAAACCAATCTGAACCACTAAAATTTCTGGGATGGGGAGAAAGGTTTCCTTGATTAAGAATTTCAAGCA
ATCTTCTTAGTAATTCTTCTCCTGCTAGGGAAACAAAACAAGTTATCACTTTCTTTTCCTTTTTGGAACTAAGGCTCAGGTAACATATCAATTACATATACAGAGCATGG
AGAATCTTACAACAGACGTGAATTTCAAACAAGAAAACAAAAATGCTTCTCTAAACCATTCTAGATTCAGCTGACCTGTTGAGAAAGAAGAACAAGCAGTCCTTGGGGAC
CGAGCAATATCTCGTTGAGGAAACTAACCAATCCGAACCAGACAACAGGCGTTACGTCAACTCCGCCAAGAGGGGGAATCACCTTCCTTGTCACAATTAGAAGTGGTTCA
GTTGGAGCATAAGCTACAACATATGGAAACTTCCCCACAGGTAACTTTGGATACCAAGACATCACTATTCTCACAATAAACAAAAACGAAAATGCCGAGAGAAACGGACC
CAGAAAGCCGATTGCGAGCTTTGCCGTTGCTGGGTCGAGGTCGGCCAGGGCCATGTTTTTCGTGAAATCAGAGGCAGCCATTGATGCATCTTGCAGGGCAAAGGGGGTAG
TTCTTGTACCTTCAAATGCAGCAGCTGGCTTTAATGGAGGGGTGGCAGAGGCTAATAACAGAGCAACCTTGGAAGAGGTAACAGTAGAACCCAATAAGGATGAGCTACAC
TGGAGCGCCTGGAATCTGTAGTTTGGATTTCTTTGAGGATGGTGCTTAAAGCCTCTCTGTTAAAGGAAACAAAG

Protein sequence

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FKMSATFPTSLIVSSSHSNEFIRLCFLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSH
VEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQD
KFMTFDQNSDQDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITMNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQKNS

MC09g0588 (gene) of Bitter gourd (Dali-11) v1 genome