; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g0632 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0632
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionnuclear transcription factor Y subunit B-5-like
Genome locationMC09:5755501..5755896
RNA-Seq ExpressionMC09g0632
SyntenyMC09g0632
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451614.1 PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]7.46e-7779.61Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKYDFTGG                     GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

XP_011659350.1 nuclear transcription factor Y subunit B-5 [Cucumis sativus]3.58e-7780.26Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKYDFTGG                     GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN+S
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

XP_022144461.1 nuclear transcription factor Y subunit B-5-like [Momordica charantia]1.75e-90100Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGF
        MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGF
Subjt:  MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGF

Query:  DDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        DDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
Subjt:  DDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

XP_023549145.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]3.65e-7679.61Show/hide
Query:  MDDNTEKSERVEEFKYDFT--GGDGV------------------VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ER+ EFKYDFT  GG GV                  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFT--GGDGV------------------VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYL+RYRE+EGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

XP_038876756.1 nuclear transcription factor Y subunit B-1-like [Benincasa hispida]7.69e-7880.26Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGDG--------------------VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER+ EFKYDFTGG G                    VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFTGGDG--------------------VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

TrEMBL top hitse value%identityAlignment
A0A0A0K954 CBFD_NFYB_HMF domain-containing protein1.73e-7780.26Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKYDFTGG                     GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN+S
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

A0A1S3BT19 nuclear transcription factor Y subunit B-13.61e-7779.61Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKYDFTGG                     GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFTGGD--------------------GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

A0A6J1CTG8 nuclear transcription factor Y subunit B-5-like8.45e-91100Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGF
        MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGF
Subjt:  MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGF

Query:  DDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        DDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
Subjt:  DDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

A0A6J1GM85 nuclear transcription factor Y subunit B-1-like5.24e-7677.78Show/hide
Query:  MDDNTEKSERVEEFKYDFTGGDG---------------------VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
        MDDNT   ER+ EFKYDFT G G                      VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
Subjt:  MDDNTEKSERVEEFKYDFTGGDG---------------------VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH

Query:  KEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        KEKRKTVNGDDIC ALATLGFDDYAEPLRRYL+RYRE+EGERAQQNKGCCN++
Subjt:  KEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

A0A6J1JM11 nuclear transcription factor Y subunit B-11.77e-7679.61Show/hide
Query:  MDDNTEKSERVEEFKYDFT--GGDGV------------------VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ER+ EFKYDFT  GG GV                  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYDFT--GGDGV------------------VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYL+RYRE+EGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

SwissProt top hitse value%identityAlignment
O23310 Nuclear transcription factor Y subunit B-31.0e-3771.57Show/hide
Query:  GGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEG
        GG+   +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YRE+EG
Subjt:  GGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEG

Query:  ER
        E+
Subjt:  ER

O82248 Nuclear transcription factor Y subunit B-55.2e-4279.09Show/hide
Query:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ
        +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+  
Subjt:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ

Query:  QN-KGCCNSS
         + KG   SS
Subjt:  QN-KGCCNSS

Q0J7P4 Nuclear transcription factor Y subunit B-111.0e-3773.79Show/hide
Query:  GGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEG
        GGD   KEQDR LPIANV RIMK+ LP NAKISKE+KET+QECVSEFISFVTGEASDKC +EKRKT+NGDD+  A+ TLGF+ Y  PL+ YL RYRE EG
Subjt:  GGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEG

Query:  ERA
        E+A
Subjt:  ERA

Q9FGJ3 Nuclear transcription factor Y subunit B-21.0e-3778.12Show/hide
Query:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGER
        +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+RE+EGER
Subjt:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGER

Q9SLG0 Nuclear transcription factor Y subunit B-11.7e-3770Show/hide
Query:  GGD--GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREM
        GG+  G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+
Subjt:  GGD--GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREM

Query:  EGERAQQNKG
        EG+    NKG
Subjt:  EGERAQQNKG

Arabidopsis top hitse value%identityAlignment
AT2G38880.2 nuclear factor Y, subunit B11.2e-3870Show/hide
Query:  GGD--GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREM
        GG+  G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+
Subjt:  GGD--GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREM

Query:  EGERAQQNKG
        EG+    NKG
Subjt:  EGERAQQNKG

AT2G38880.3 nuclear factor Y, subunit B11.2e-3870Show/hide
Query:  GGD--GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREM
        GG+  G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+
Subjt:  GGD--GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREM

Query:  EGERAQQNKG
        EG+    NKG
Subjt:  EGERAQQNKG

AT2G47810.1 nuclear factor Y, subunit B53.7e-4379.09Show/hide
Query:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ
        +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+  
Subjt:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ

Query:  QN-KGCCNSS
         + KG   SS
Subjt:  QN-KGCCNSS

AT4G14540.1 nuclear factor Y, subunit B37.2e-3971.57Show/hide
Query:  GGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEG
        GG+   +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YRE+EG
Subjt:  GGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEG

Query:  ER
        E+
Subjt:  ER

AT5G47640.1 nuclear factor Y, subunit B27.2e-3978.12Show/hide
Query:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGER
        +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+RE+EGER
Subjt:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATAACACAGAGAAATCAGAGAGAGTAGAAGAATTCAAGTATGATTTCACCGGCGGCGACGGGGTTGTGAAGGAGCAAGATCGGCTACTTCCGATAGCGAATGT
GGGGAGGATAATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAGGAATGTGTGTCAGAGTTCATCAGCTTTGTCACCGGCGAGG
CGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACGGTGAACGGCGACGACATCTGCTCGGCCTTGGCGACGCTCGGTTTCGACGATTACGCGGAGCCTTTGAGGAGGTAT
TTGGTTAGGTATAGAGAGATGGAAGGGGAGAGAGCTCAACAGAATAAGGGATGCTGCAATAGTTCT
mRNA sequenceShow/hide mRNA sequence
ATGGATGATAACACAGAGAAATCAGAGAGAGTAGAAGAATTCAAGTATGATTTCACCGGCGGCGACGGGGTTGTGAAGGAGCAAGATCGGCTACTTCCGATAGCGAATGT
GGGGAGGATAATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAGGAATGTGTGTCAGAGTTCATCAGCTTTGTCACCGGCGAGG
CGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACGGTGAACGGCGACGACATCTGCTCGGCCTTGGCGACGCTCGGTTTCGACGATTACGCGGAGCCTTTGAGGAGGTAT
TTGGTTAGGTATAGAGAGATGGAAGGGGAGAGAGCTCAACAGAATAAGGGATGCTGCAATAGTTCT
Protein sequenceShow/hide protein sequence
MDDNTEKSERVEEFKYDFTGGDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRY
LVRYREMEGERAQQNKGCCNSS