CuGenDBv2

Gene ID	MC09g0670
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	SOSS complex subunit B homolog
Genome location	MC09:6121482..6121673
RNA-Seq Expression	MC09g0670
Synteny	MC09g0670
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]

1.38e-28

70.89

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]

1.41e-28

70.89

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]

9.16e-29

71.79

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG--------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        CLS VADETAAVHFQLWGDEC+ VEPS+II LTNG              KR KIEKVGEFNMVFVETPNMSE  WVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG--------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

1.38e-28

69.62

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWG+EC+VVEPS+I+ LTNG               KR KIEKVGEFNMVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

1.38e-28

70.89

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LW03 Uncharacterized protein

6.66e-29

70.89

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A1S3BPN4 SOSS complex subunit B homolog

6.85e-29

70.89

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A5D3CIR3 SOSS complex subunit B-like protein

6.85e-29

70.89

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A6J1D803 SOSS complex subunit B homolog

4.43e-29

71.79

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG--------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        CLS VADETAAVHFQLWGDEC+ VEPS+II LTNG              KR KIEKVGEFNMVFVETPNMSE  WVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG--------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A6J1HAL0 SOSS complex subunit B homolog

6.66e-29

69.62

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD
        C S VADETAAVHFQLWG+EC+VVEPS+I+ LTNG               KR KIEKVGEFNMVFVETPNMSE HWVPD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGEFNMVFVETPNMSETHWVPD

SwissProt top hits

e value

%identity

Alignment

A6QLK2 SOSS complex subunit B1

1.1e-05

36.76

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Query:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q3SWT1 SOSS complex subunit B1

1.1e-05

36.76

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Query:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q66K94 SOSS complex subunit B1

2.5e-05

36.76

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Query:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VAD+T +++  +W D  N ++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q8R2Y9 SOSS complex subunit B1

1.1e-05

36.76

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Query:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q9BQ15 SOSS complex subunit B1

1.1e-05

36.76

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Query:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

2.0e-18

51.9

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Query:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C++  ADETAAVH QLWGDEC+  E  +I+ LTN               GKR K+EK+GEF + FVETPN+SE  W+PD
Subjt:  CLSPVADETAAVHFQLWGDECNVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

Sequences

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CDS sequence

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TGCCTATCACCGGTGGCCGACGAAACGGCCGCAGTTCACTTCCAGTTATGGGGAGATGAGTGCAACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAG
AAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

mRNA sequence

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TGCCTATCACCGGTGGCCGACGAAACGGCCGCAGTTCACTTCCAGTTATGGGGAGATGAGTGCAACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAG
AAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

Protein sequence

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CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNGKRRKIEKVGEFNMVFVETPNMSETHWVPD

MC09g0670 (gene) of Bitter gourd (Dali-11) v1 genome