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MC09g0762 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0762
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPSII 6.1 kDa protein
Genome locationMC09:7366347..7366670
RNA-Seq ExpressionMC09g0762
SyntenyMC09g0762
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]2.06e-5185.19Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVF LIW+FYIVYTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]2.60e-5286.11Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVFGLIW+FYIVYTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

XP_022155800.1 photosystem II reaction center W protein, chloroplastic [Momordica charantia]2.23e-6498.13Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED
        ++GLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED

Query:  EESGLSL
        EESGLSL
Subjt:  EESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]2.66e-5185.98Show/hide
Query:  VGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED
        +GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVF LIW+FYIVYTS+LEED
Subjt:  VGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED

Query:  EESGLSL
        EESGLSL
Subjt:  EESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.02e-5185.19Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WIL GVFGLIW+FYIVYTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein9.98e-5285.19Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVF LIW+FYIVYTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein1.26e-5286.11Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVFGLIW+FYIVYTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein2.08e-5185.19Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GK + E ENK S+L MGASLIAA  A TMSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVFGLIW+FYIVYTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

A0A6J1DNF4 PSII 6.1 kDa protein1.08e-6498.13Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED
        ++GLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEED

Query:  EESGLSL
        EESGLSL
Subjt:  EESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein2.86e-5182.41Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLPALGKKGGVRCSME GKA+ + ENK S+LGMGASL+AA  A +MSSPAMALVDERLSTEGTGLPFGLSNNLL WILLGVFG IW+FYI+YTS+LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.2e-3167.59Show/hide
Query:  MVGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLP +G KKGGVRCSME    +K+        G+ A+  AA+   MS+PAMALVDER+STEGTGLPFGLSNNLL WIL GVFGLIW+F+ VYTSSLEE
Subjt:  MVGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic7.1e-2964.81Show/hide
Query:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLI-AAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLP++ K+  V CS+ E K S       ++  MGASL+ AA A T+S+PAMALVDER+STEGTGLPFGLSNNLL WIL GVFGLIW+ Y VY S LEE
Subjt:  MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLI-AAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic3.4e-2361.32Show/hide
Query:  VGLPALGKKGG--VRCSMEEGKASKEAENKCSSL-GMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLE
        +GLP +  +    VRC+      SKEA    +++ G GASL+A  AT  ++PAMALVDER+STEGTGL  GLSNNLL WILLGVFGLIWS Y +YTS LE
Subjt:  VGLPALGKKGG--VRCSMEEGKASKEAENKCSSL-GMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLE

Query:  EDEESG
        EDEESG
Subjt:  EDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic9.6e-1045.21Show/hide
Query:  ASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLE--EDEESGLSL
        A L    AT  + PA ALVDER++ +GTG PFG+++ +L W+LLGVFG +W+ + +    L   ED + GL L
Subjt:  ASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W8.3e-3367.59Show/hide
Query:  MVGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE
        ++GLP +G KKGGVRCSME    +K+        G+ A+  AA+   MS+PAMALVDER+STEGTGLPFGLSNNLL WIL GVFGLIW+F+ VYTSSLEE
Subjt:  MVGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEE

Query:  DEESGLSL
        DEESGLSL
Subjt:  DEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGATGGTAGGGTTGCCTGCGTTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGG
TGCGTCGTTGATCGCTGCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACA
ATCTTCTTGCTTGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTT
mRNA sequenceShow/hide mRNA sequence
TTGATGGTAGGGTTGCCTGCGTTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGG
TGCGTCGTTGATCGCTGCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACA
ATCTTCTTGCTTGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTT
Protein sequenceShow/hide protein sequence
LMVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL